Publications
2020
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Object Selection in Computer Vision: From Multi-thresholding to Percolation Based Scene Representation
Vladimir Yu. Volkov, Mikhail I. Bogachev, Airat R. Kayumov
Computer Vision in Advanced Control Systems-5 pp 161-194
Antistaphylococcal activity of 2(5H)-furanone derivatives
Airat R.Kayumov, Irshad S.Sharafutdinov, Elena Yu Trizna, Mikhail I.Bogachev
In book: New and Future Developments in Microbial Biotechnology and Bioengineering: Microbial Biofilms
https://doi.org/10.1016/B978-0-444-64279-0.00006-2
Increasing Susceptibility of Drug-Resistant Candida albicans to Fluconazole and Terbinafine by 2(5H)-Furanone Derivative
Irshad S. Sharafutdinov,Georgii D. Ozhegov, Alina E. Sabirova, Valentina V. Novikova, Svetlana A. Lisovskaya, Alsu M. Khabibrakhmanova, Almira R. Kurbangalieva, Mikhail I. Bogachev and Airat R. Kayumov
Molecules 2020, 25(3), 642; https://doi.org/10.3390/molecules25030642
N- and C-terminal regions of the small heat shock protein IbpA from Acholeplasma laidlawii competitively 
govern its oligomerization pattern and chaperone-like activity
Liliya S. Chernova, Mikhail I. Bogachev, Vitaly V. Chasov, Innokentii E. Vishnyakov and Airat R. Kayumov
DOI: 10.1039/C9RA10172A (Paper) RSC Adv., 2020, 10, 8364-8376
Identification of Antimicrobial Peptides from Novel Lactobacillus fermentum Strain
Pavlova, A.S., Ozhegov, G.D., Arapidi, G.P., Butenko, I.O., Fomin, E.S., Alemasov, N.A., Afonnikov, D.A., Yarullina, D.R., Ivanov, V.T., Govorun, V.M., Kayumov, A.R.
(2020) Protein Journal, .
https://doi.org/0.1007/s10930-019-09879-8
2019
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Newly isolated lactic acid bacteria from silage targeting biofilms of
foodborne pathogens during milk fermentation
Gavrilova, E., Anisimova, E., Gabdelkhadieva, A., Nikitina, E., Vafina, A., Yarullina, D., Bogachev, M., Kayumov, A.
(2019) BMC Microbiology, 19 (1), статья № 248,
https://doi.org/10.1186/s12866-019-1618-0
Current Approaches to the Evaluation of Soil Genotoxicity
Kayumov, A.R., Solovyev, D.A., Bobrov, D.E., Rizvanov, A.A.
(2019) BioNanoScience, 9 (3), pp. 758-764.
https://doi.org/10.1007/s12668-019-00652-w
Degrading of the Pseudomonas Aeruginosa Biofilm by Extracellular
Levanase SacC from Bacillus subtilis
Trizna, E., Bogachev, M.I., Kayumov, A.
(2019) BioNanoScience, 9 (1), pp. 48-52.
https://doi.org/10.1007/s12668-018-0581-9
Selection and Quantification of Objects in Microscopic Images:
from Multi-Criteria to Multi-Threshold Analysis
Bogachev, M.I., Volkov, V.Y., Kolaev, G., Chernova, L., Vishnyakov, I., Kayumov, A.
(2019) BioNanoScience, 9 (1), pp. 59-65.
https://doi.org/10.1007/s12668-018-0588-2
Unraveling the Molecular Mechanism of Selective Antimicrobial 
Activity of 2(5H)-Furanone Derivative against Staphylococcus aureus.
Sharafutdinov IS, Pavlova AS, Akhatova FS, Khabibrakhmanova AM, Rozhina EV, Romanova YJ, Fakhrullin R, Lodochnikova OA, Kurbangalieva AR, Bogachev MI, Kayumov AR.
Int J Mol Sci. 2019 Feb 6;20(3). pii: E694.
https://www.mdpi.com/1422-0067/20/3/694/htm
Targeting Bacillus cereus cells: increasing efficiency of antimicrobials by
the bornylpossessing
2(5Н)-furanone derivative.
Sharafutdinov IS, Pavlova AS, Khabibrakhmanova AM, Faizova RG, Kurbangalieva AR, Tanaka K, Trizna EY, Baidamshina DR, Bogachev MI, Kayumov AR.
New Microbiol. 2019 Jan 23;42(1).
http://www.newmicrobiologica.org/PUB/allegati_pdf/2019/1/29.pdf
2018
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Characterization of Erythromycin and Tetracycline Resistance in Lactobacillus
fermentum Strains
Anisimova E., Yarullina D.
Int. Journal of Microbiology Vol. 2018, ID 3912326, P. 9
https://doi.org/10.1155/2018/3912326
Fast and simple tool for the quantification of biofilm-embedded cells 
sub-populations from fluorescent microscopic images
Bogachev M.I, Volkov V.Y, Markelov O.A
PLoS ONE. - 2018. - Vol.13, Is.5. - Art. № e0193267
Efficient fructose production from plant extracts by immobilized inulinases from
Kluyveromyces 
marxianus and Helianthus tuberosus
M.G. Holyavka, A.R. Kayumov, D.R. Baydamshina, V.A. Koroleva, E.Yu. Trizna,
M.V. Trushin, V.G. Arktyukhova
Int. Journal of Microbiology V. 115, August 2018, Pages 829-834
https://www.sciencedirect.com/science/article/pii/S0141813018318890
2017
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Elucidation of the Mode of Action of New Antibacterial Bis-Phosphonium Salts of
Pyridine Derivatives Active AgainstStaphylococcus aureus
Nikitina, E.V., Zeldi, M.I., Vafina, R.M., Pugachev, M.V., Shtyrlin, N.V., Kuznetsova, S.V., Evtugyn, V.G., Kayumov, A.R. and Shtyrlin, Y.G.
Res. J. Pharm, Biol Chem. Scien., 8(3), pp.1906-1915.
New quaternary ammonium pyridoxine derivatives: synthesis and antibacterial
activity
S. V. Sapozhnikov, N. V. Shtyrlin, A.R. Kayumov, A. E. Zamaldinova, A.G. Iksanova, Е. V. Nikitina, Е. S. Krylova, D. Yu. Grishaev, K. V. Balakin, Y. G. Shtyrlin
Medicinal Chemistry Research, December 2017, V. 26, Issue 12, pp 3188–3202
https://link.springer.com/article/10.1007/s00044-017-2012-9
Elucidation of the Mode of Action of New Antibacterial Bis-Phosphonium Salts of 
Pyridine Derivatives Active Against Staphylococcus aureus.
Elena V. Nikitina, Marina I. Zeldi, Rozalia M. Vafina, Mikhail V. Pugachev, Nikita V. Shtyrlin, Svetlana V. Kuznetsova, Vladimir G. Evtugyn, Airat R. Kayumov, and Yurii G. Shtyrlin.
Res. J. Pharm, Biol Chem. Scien. - 2017. - V.8, N.3. - 1906-1915.
https://www.rjpbcs.com/pdf/2017_8(3)/[223].pdf
HtrA protein hyperproduction increases the viability of Bacillus subtilis cells under 
the stress conditions and stimulates biofilm formation.
Chernova L.S., Sharafutdinov I.S., Kayumov A.R.
Uchenye Zapiski Kazanskogo Universiteta. Seriya Estestvennye Nauki, 2017, vol. 159,
no. 2, pp. 262–271. (In Russian)
http://kpfu.ru/giperprodukciya-belka-htra-povyshaet-vyzhivaemost_304139.html
Antimicrobial Effects of Sulfonyl Derivative of 2(5H)-Furanone against Planktonic and
Biofilm Associated Methicillin-Resistant and -Susceptible Staphylococcus aureus
Irshad S. Sharafutdinov , Elena Y. Trizna , Diana R. Baidamshina , Maria N. Ryzhikova , Regina R. Sibgatullina, Alsu M. Khabibrakhmanova, Liliya Z. Latypova, Almira R. Kurbangalieva, Elvira V. Rozhina, Mareike Klinger-Strobel, Rawil F. Fakhrullin, Mathias W. Pletz, Mikhail I. Bogachev,
Airat R. Kayumov and Oliwia Makarewicz
https://www.frontiersin.org/articles/10.3389/fmicb.2017.02246/full
Exploring the Integration of Threaded Implants: the Chemical Deep Etching
Approach
Fanilya A. Hafizova1 & Ruslan M. Mirgazizov1 & Rais G. Hafizov1 & Airat M. Mirgazizov1
& Dmitriy E. Tsyplakov & Irek R. Hafizov & Dina A. Azizova & Мikhail A. Sergeev & Airat R. Kayumov & Marsel Z. Mirgazizov
BioNanoScience -2017
Antagonistic Activity of Lactobacilli Isolated from Natural Ecotopes
E. A. Anisimova, D. R. Yarullina, and O. N. Ilinskaya
Microbiology, 2017, Vol. 86, No. 6, pp. 708–713.
https://link.springer.com/article/10.1134/S0026261717060054
Assessment of Resistance and Bioremediation Ability of Lactobacillus Strains
to Lead and Cadmium
Anna V. Kirillova, Anna A. Danilushkina, Denis S. Irisov, Nataliya L. Bruslik,
Rawil F. Fakhrullin,Yuri A. Zakharov, Vladimir S. Bukhmin and Dina R. Yarullina
Int. Journal of Microbiology - 2017, Article ID 9869145
https://www.hindawi.com/journals/ijmicro/2017/9869145/
Involvement of Iron in Biofilm Formation by Lactobacillus rhamnosus
Natalia L. Bruslik, Aigul I. Salakhutdinova, Dina R. Yarullina
BioNanoScience -2017, Vol. 7, pp 70–72, DOI: 10.1007/s12668-016-0290-1
https://link.springer.com/article/10.1007/s12668-016-0290-1/fulltext.html?wt_mc=alerts.TOCjournals
Assessment of Resistance and Bioremediation Ability of Lactobacillus 
Strains to Lead and Cadmium.
Anna V Kirillova, Anna A Danilushkina, Denis S Irisov, Nataliya L Bruslik, Rawil F Fakhrullin, Yuri A Zakharov, Vladimir S Bukhmin, Dina R Yarullina
International Journal of Microbiology-2017
https://www.hindawi.com/journals/ijmicro/2017/9869145/abs/
Targeting microbial biofilms using Ficin, a nonspecific 1 plant protease.
Diana R. Baidamshina, Elena Y. Trizna, Marina G. Holyavka, Mikhail I. Bogachev,
Valeriy G. Artyukhov, Farida S. Akhatova, Elvira V. Rozhina , Rawil F. Fakhrullin and
Airat R. Kayumov.
Scientific Reports - 2017
www.nature.com/articles/srep46068
Recombinant Small Heat Shock Protein from Acholeplasma laidlawii Increases 
the Escherichia coli Viability in Thermal Stress by Selective Protein Rescue.
A. R. Kayumova, M. I. Bogachevb , V. A. Manuverac , V. N. Lazarevc , A. V. Sabantsevd , T. O. Artamonovad, S. N. Borchseniuse , I. E. Vishnyakov.
Mol.Biol. 2017, Vol. 51, No. 1, pp. 112–121. DOI: 10.1134/S0026893317010083
https://link.springer.com/article/10.1134/S0026893317010083
Superstatistical model of bacterial DNA architecture.
M.I. Bogachev, O.A. Markelov, A.R. Kayumov, A. Bunde. Scientific Reports 7.- 2017 DOI:10.1038/srep43034
http://www.nature.com/articles/srep43034
2016
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The Molecular Basis of TnrA Control by Glutamine Synthetase in Bacillus subtilis.
Hauf K, Kayumov A, Gloge F, Forchhammer K.
J Biol Chem. 2016 Feb 12;291(7):3483-95. doi: 10.1074/jbc.M115.680991.
http://www.jbc.org/content/291/7/3483.short
Statistical prediction of protein structural, localization and functional properties by the analysis of its fragment mass distributions after proteolytic cleavage.
Bogachev MI, Kayumov AR, Markelov OA, Bunde A.
Sci Rep. 2016 Feb 29;6:22286. doi: 10.1038/srep22286.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770285/
HtrA protease from Bacillus subtilis suppresses the bacterial fouling of the rat skin injuriesa. I.Sharafutdinov, Z. Shigapova, M. Baltin, N. Akhmetov, M. Bogachev, A. Kayumov. BioNanoScience. - 2016 DOI 10.1007/s12668-016-0281-2
http://link.springer.com/article/10.1007/s12668-016-0281-2
Mycoplasma diversity in Arctic permafrost. Vishnyakov I.E., Borchsenius S.N., Kayumov A.R., Rivkina E.M. BioNanoScience. - 2016. doi: 10.1007/s12668-016-0280-3.
http://link.springer.com/article/10.1007/s12668-016-0280-3
Recombinant FtsZ Proteins from Mollicutes Interactwith Escherichia coli Division Machinery. A.D. Vedyaykin, A.V. Sabantsev, M.A. Khodorkovskii, A.R. Kayumov, I.E. Vishnyakov. BioNanoScience. - 2016. DOI: 10.1007/s12668-016-0248-3.
http://link.springer.com/article/10.1007/s12668-016-0248-3
The Temperature-Dependent Selectivity of Potential Interaction Partners for the Small Heat Shock Protein IbpA from Acholeplasma laidlawii. I.E. Vishnyakov, M. Bogachev, I. Salafutdinov, S.N. Borchsenius, A.R. Kayumov. BioNanoScience. - 2016. DOI: 10.1007/s12668-016-0259-0.
http://link.springer.com/article/10.1007/s12668-016-0259-0
Trizna E. 2(5H)-Furanone Derivatives as Inhibitors of Staphylococcal Biofilms. E. Trizna, L. Latypova, A. Kurbangalieva, M. Bogachev, A. Kayumov. BioNanoScience. - 2016. DOI: 10.1007/s12668-016-0258-1.
http://link.springer.com/article/10.1007/s12668-016-0258-1
13/03/2021
