Publications 2016 - 2017

Publications of our laboratory and partner IGBMC labs in the area of researches

2017

Petrova, O.A. Structure and function of the N-terminal domain of the telomerase reverse trans­criptase [text]  /Petrova, O.A., Mantsyzov, A.B., Rodina, E.V., Efimov, S.V., Hackenberg, C., Hakanpää, J., Klochkov, V.V., Lebedev, A., Malyavko, A., Zatsepin, T.S., Zvereva, M.I., Lamzin, V.S., Dontsova, O.A., Polshakov, V.I.//Nucleic Acids Research.- 2017.- in press

Efimov, S.V.  Spectroscopic and Structural Data for Bovine Insulin Obtained by NMR [text] /S.V. Efimov, Yu.O. Zgadzay, N.B. Tarasova, V.V. Klochkov// Journal of Molecular Structure. – 2017.- in press.

Nikitina, L.E. Development of Approaches to the Study of the Interaction of Biologically Active Thioterpenoids with Model Membranes [text] / L. E. Nikitina, S. V. Kiselev, A. V. Bodrov, V. A. Startseva, N. P. Artemova, V. V. Klochkov, L. F. Galiullina, O. V. Aganova, A. V. Khaliullina, O. A. Lodochnikova, Z. R. Azizova, A. A. Rakhmatullina // BioNanoScience. – 2017.-

Rakhmatullin,I.Z.  Complicated Conformational Exchange of New Pyridoxine Derivative. Dynamic 13C NMR Characterization [text] /I.Z. Rakhmatullin, L.F. Galiullina, F.K. Karataeva, V.V. Klochkov// BioNanoScience. – 2017.-

Mariasina, Sofia S.  Chemical shift assignments and the secondary structure of the Est3 telomerase subunit in the yeast Hansenula polymorpha [text] / Sofia S. Mariasina, Sergey V. Efimov,  Olga A. Petrova,  Elena V. Rodina, Alexander N. Malyavko,  Maria I. Zvereva,  Vladimir V. Klochkov, Olga A. Dontsova, Vladimir I. Polshakov// Biomolecular NMR Assignments. – 2017.- V. .., Issue …. –P. 1-6,   IPP 0.475; ISSN:  1874-2718. DOI 10.1007/s12104-017-9780-5.

Latfullin I.A. Statins and their interaction with model cell membranes according to the data of nuclear magnetic resonance spectroscopy / Latfullin I.A., Galiullina L.F., Musabirova G.S., Aganova O.V., Kim Z.F., Aganov A.V., Klochkov V.V.// Rational Pharmacotherapy in Cardiology. -2017.- Vol - 13(2), pp. 256-262. 

Khairutdinov B.I. NMR structure, conformational dynamics, and biological activity of PsDef1 defensin from Pinus sylvestris / Khairutdinov B.I., Zuev Y.F. Biochimica et Biophysica Acta - Proteins and Proteomics. - 1865(8), pp. 1085-1094.

Khusainov I. Structures and dynamics of hibernating ribosomes from Staphylococcus aureus mediated by intermolecular interactions of HPF I. Khusainov, Q. Vicens, R. Ayupov, K. Usachev, A. Myasnikov, A. Simonetti, S. Validov, B. Kieffer, G. Yusupova, M. Yusupov, Y. Hashem // Embo Journal. - 2017. - V. 36. - P. 2073-2087.

Usachev K. Simple Gd³⁺-Neu5: N Ac complexation results in NMR chemical shift asymmetries of structurally equivalent complex-type N-glycan branches /K. Usachev,  Y. Yamaguchi,  M. Takamatsu,  N. Pavlova,  V. Klochkov, A. Kurbangalieva, T. Murase, T. Shimodae, K. Tanaka // Analyst. - 2017. - V. 142. - P. 2897-2900

Usachev, K.S. NMR assignments of the N-terminal domain of Staphylococcus aureus hibernation promoting factor (SaHPF) / K.S. Usachev, R.K. Ayupov,  S.Z. Validov,  I.S. Khusainov,  M.M. Yusupov // Biomolecular NMR Assignments. - 2017. doi: 10.1007/s12104-017-9783-2.

Galiullina, Leisan  Interaction of different statins with model membranes by NMR data [text]  /Leisan Galiullina, Oksana Aganova, Ildus Latfullin, Guzel Musabirova,  Albert Aganov, Vladimir Klochkov// BBA - Biomembranes. - 2017. - V. 1859, N 3. - P. 295-300. IPP 3.8.

Nikitina, Liliya E. Extraordinary Behavior of β-Hydroxy Sulfoxides and Sulfone of Pinane Series [text] / Liliya E. Nikitina, Olga A. Lodochnikova, Valeriya A. Startseva, Andrei V. Bodrov, Nadezhda P. Artemova, Alexander E. Klimovitskii, Vladimir V. Klochkov// Phosphorus, Sulfur, and Silicon and the Related Elements. - 2017. - V. 192, Issue 2. - P. 187-191. http://dx.doi.org/10.1080/10426507.2016.1255619

2016

Khusainov I. Structure of the 70S ribosome from human pathogen Staphylococcus aureus / Khusainov I., Q. Vicens, A. Bochler, F. Grosse, A. Myasnikov, J.-F. M?F?n?F?tret, J. Chicher,  S. Marzi, P. Romby, G. Yusupova, M. Yusupov, Y. Hashem // Nucleic Acid Research. - 2016.  V. 44(21). - P. 10491–10504

Rozov A. The ribosome prohibits the G-U wobble geometry at the first position of the codon-anticodon helix /A. Rozov, E. Westhof, M. Yusupov, G. Yusupova// Nucleic Acids Research. - 2016. - V44. - P. 6434-6441

Usachev K.S. Oligomerization of the antimicrobial peptide protegrin-5 in membrane mimicking environment. Structural studies by high-resolution NMR spectroscopy /  K.S. Usachev, O.A. Kolosova, E.A. Klochkova, A.R. Yulmetov, A.V. Aganov, V.V. Klochkov // European Biophysics Journal.-2016.– doi:10.1007/s00249-016-1167-5

Kolosova O.A., Antimicrobial Peptide Protegrins Interact with DPC Micelles by Apolar Hydrophobic Cluster: Structural Studies by High-Resolution NMR Spectroscopy / O.A. Kolosova, K.S. Usachev, A.V. Aganov, V.V. Klochkov // BioNanoScience. – 2016. – V.6. - P. 317–319

Abdrakhmanov R. NMR Studies of the Mn2+ Interactions with Amyloid Peptide Ab13-23 in Water Environment / R. Abdrakhmanov, D. Blokhin, K. Usachev, F. Karataeva, V. Klochkov // BioNanoScience. – 2016. – V.7(1). - pp 204–206. - doi: 10.1007/s12668-016-0317-7

Khusainov I. A glimpse on Staphylococcus aureus translation machinery and its control  / I. Khusainov, A. Marenna, M. Cerciat, P. Fechter, Y. Hashem, S. Marzi, P. Romby, G.  Yusupova, M. Yusupov   // Molecular Biology. - 2016. - V.50(4).- P. 477-488

Wilson D. Ribosomes Structure and Mechanisms in Regulation of Protein Synthesis Part i  / D. Wilson, C. Spahn, M. Yusupov  // Journal of Molecular Biology. - 2016. - V.428.- P. 2133

Melnikov S. Crystal Structure of Hypusine-Containing Translation Factor eIF5A Bound to a Rotated Eukaryotic Ribosome / S. Melnikov , J. Mailliot, B.-S. Shin, L. Rigger, G. Yusupova, R. Micura, T.E. Dever, M. Yusupov  // Journal of Molecular Biology. - 2016. - V.428. - P. 3570–3576

Prokhorova I.V. Amicoumacin A induces cancer cell death by targeting the eukaryotic ribosome / I.V. Prokhorova, K.A. Akulich, D.S. Makeeva, I.A. Osterman, D.A. Skvortsov, P.V. Sergiev, O.A. Dontsova,  G. Yusupova, M.M. Yusupov, S.E. Dmitriev  // Scientific Reports. - 2016. - V.6. - Article number: 27720 

Rozov A. New Structural Insights into Translational Miscoding / N.Demeshkina, E. Westhof, M.Yusupov, G.Yusupova  // Trends in Biochemical Sciences. - V. 49. - P. 798–814 

Auypov R.K. Prediction of the three-dimensional structure of the protein SaHPF and analysis of its molecular dynamics /  R.K. Ayupov, N.I. Akberova // International Journal of Pharmacy and Technology. - 2016. - V. 8 (2). - P. 14548-14557.

Auypov R.K. The fluctuation analysis of conformational mobility for pyridoxine derivatives in the active site of acetylcholinesterase / R.K. Ayupov, N.I. Akberova // International Journal of Pharmacy and Technology. - 2016. - V. 8 (2). - P. 14539-14547.

Auypov R.K. Isolation and purification of staphylococcus aureus hibernationpromoting factor inactivating of the ribosome / R.K. Ayupov,  I.Sh. Khusainov, S.Z. Validov, G.Z. Yusupova, M.M. Yusupov // International Journal of Pharmacy and Technology. - 2016. - V. 8 (2). - P. 14392-143986. 

Mailliot J. Crystal Structures of the uL3 Mutant Ribosome: Illustration of the Importance of Ribosomal Proteins for Translation Efficiency / J.Mailliot, N.Garreau De Loubresse,  G.Yusupova, A.Meskauskas, J.D.Dinman, M.Yusupov // Journal of Molecular Biology. - 2016. - V.428. - P.2195-2202   

Yusupov M. Ribosomes Structure and Mechanisms in Regulation of Protein Synthesis Part i / M.Yusupov,   D.Wilson, C.Spahn // Journal of Molecular Biology. - 2016. - V. 248. - P.2133

Rozov A. Novel base-pairing interactions at the tRNA wobble position crucial for accurate reading of the genetic code / A. Rozov, N. Demeshkina, I. Khusainov, E. Westhof, M. Yusupov, G. Yusupova // Nature communications. - 2016. DOI: 10.1038/ncomms10457 

Agalarov, S. Reconstitution of functionally active thermus thermophilus 30s ribosomal subunit from ribosomal 16s rna and ribosomal proteins / S.Agalarov, M.Yusupov, G.Yusupova // Methods in Molecular Biology. - 2016. - V. 1320. - P. 303-314

Aganova, O.V. Synthesis and NMR study of conformational structure and dynamics of the new quarternary phosphonium salts [Text] / O.V. Aganova, L.F. Galiullina, A.V. Aganov, N.V. Shtyrlin, M.V. Pugachev, A.D. Strel'nik, S.A. Koshkin, Yu.G. Shtyrlin, V.V. Klochkov // Magnetic Resonance in Chemistry. – 2016. – V. 54, Issue 6. – P. 320-327. IF 1.226 ; ISSN: 07491581

Polshakov, V.I. NMR assignments of the N-terminal domain of Ogataea polymorpha telomerase reverse trans­criptase [Text] /V.I. Polshakov, O.A. Petrova, Yu.Yu. Parfenova, S.V. Efimov, V.V. Klochkov, M.I. Zvereva, O.A. Dontsova // Biomolecular NMR Assignments. – 2016. - V. 10, Issue 1. –P. 183-187. IPP 0.475; ISSN: 1874-2718; DOI: 10.1007/s12104-015-9663-6 

Akhmadullin, R.M. Polyquinone synthesis by dehydrogenation agent 3,3ʹ,5,5ʹ-tetra-tert-butyl- 4,4ʹ-diphenoquinone. [Text] /R.M. Akhmadullin, D.R. Gatiyatullin, A.G. Akhmadullina, L.V. Verizhnikov, N.A. Mukmeneva, A.R. Gazizov, L.R. Tagirov, V.V. Klochkov, B.V. Yavkin, S.B. Orlinskii, T.F. Nigmatullin // Res. J. Pharm. Biol. Chem. Sci. - 2016. - V. 7, Issue 2. – P. 577-585. ISSN: 09758585 

Mironov, Vladimir. Stereoselective PCO/POC-Rearrangement of P–C-Cage Phosphorane in the Reaction of 4,5-Dimethyl-2-(2-oxo-1,2-diphenyl)ethoxy-1,3,2-dioxaphospholane with Hexafluoroacetone [Text] /Mironov, Vladimir; Dimukhametov, Mudaris; Efimov, Sergey; Aminova, Roza; Karataeva, Farida; Krivolapov, Dmitry; Mironova, Ekaterina; Klochkov, Vladimir// Journal of Organic Chemistry. - 2016  - V 81, Issue 14. - P. 5837-5850, IPP 4.502; ID: jo-2016- 003563.R1.

Rakhmatullin, I. 1H NMR Characterization of Two New Pyridoxine Derivatives [Text] /Rakhmatullin I., Galiullina L., Garipov M., Strel'nik A., Shtyrlin Y., Klochkov V. // BioNanoScience. – 2016. – V. 6. – P. 243-245. IPP 1.181; DOI 10.1007/s12668-016- 0214-0

Galiullina L.F. NMR study of conformational structure of fluvastatin and its complex with DPC micelles [Text] / Galiullina L.F., Aganova O.V., Latfullin I.A., Musabirova G.S., Aganov A.V., Klochkov V.V.// BioNanoScience. – 2016. – V.6. – P. 352–354. IPP 1.181; DOI 10.1007/s12668-016-0232-y

Rakhmatullin, I.Z.  Stereodynamics of some pyridoxine derivatives studied by dynamic and  2D NOESY 1H NMR [Text] / I.Z. Rakhmatullin, L.F. Galiullina, A.A. Balandina, M.R. Garipov, A.D. Strelnik, A.S. Galiullina, Y.G. Shtyrlin, V.V. Klochkov// BioNanoScience. – 2016. – V. 6. – P. 243-245. ISSN: 07491581. IP 1.226; DOI 10.1002/mrc.4528

Kudryavtsev, Konstantin V.  Control of Azomethine Cycloaddition Stereochemistry by CF3 Group: Structural Diversity of Fluorinated β‑Proline Dimers [Text]/Konstantin V. Kudryavtsev,  Alexey B. Mantsyzov,  Polina M. Ivantcova, Mikhail N. Sokolov, Andrei V. Churakov, Stefan Bräse, Nikolay S. Zefirov, and Vladimir I. Polshakov// Organic Letters. - 2016. - V. 18. - P. 4698−4701. IPP 6.32; DOI: 10.1021/acs.orglett.6b02327

Salin,  A.V. Effect of Anchimeric  Assistance  in  Addition  Reaction  of  Bifunctional Tertiary  Phosphines to Electron-Deficient  Alkenes [Text] /Salin,  A.V., Fatkhutdinov A.R., Il'In A.V., Shamsutdinova F.G.// International Journal of Chemical Kinetics. – 2016. - V. 48, Issue 3. -  P. 161-168. IPP 1.74; ISSN: 0538-8066.

Davletbaeva, I.M. Porous polyurethanes based on hyperbranched amino ethers of boric acid [text] / I. Davletbaeva, G. R. Nurgaliyeva, A. Akhmetshina, R. Davletbaev, A. A. Atlaskin, T. Sazanova, V. Klochkov, S. Efimov and I. V. Vorotyntsev// RSC Advances. - 2016. - V. 6. - P. 111109-111119. IPP 3.289 ; DOI: 10.1039/C6RA21638B

R. I. Litvinov, O. Kononova, D. S. Blokhin, V. V. Klochkov, J. W. Weisel, V. Barsegov, J. S. Bennett. Characterization of the interactions of Arg-Gly- Asp- and Ala-Gly- Asp-Val- peptides with the platelet integrin αIIbβ3 [text] /R. I. Litvinov, O. Kononova, D. S. Blokhin, V. V. Klochkov, J. W. Weisel, V. Barsegov, J. S. Bennett // Blood. - 2016. - V. 128, Issue 22. - P.1350. IPP 11.841.

Sokurenko, Yulia The Role of Metals in the Reaction Catalyzed by Metal-Ion- Independent Bacillary RNase [text] / Yulia Sokurenko, Vera Ulyanova, Pavel Zelenikhin, Alexey Kolpakov, Dmitriy Blokhin, Dieter Müller, Vladimir Klochkov and Olga Ilinskaya // Bioinorganic Chemistry and Applications. - 2016. - V. 2016. - 7 pages. Article ID 4121960, http://dx.doi.org/10.1155/2016/4121960. - IPP 1.488