Publications
2020
1. Structure of Neuroglobin from Cold-Water Sponge Halisarca dujardinii //
Adameyko KI, Kravchuk OI, Finoshin AD, Gusev OA et al. Mol Biol (Mosk). 2020;54(3):474-479. doi:10.31857/S0026898420030039
2. A novel HLA‐B allele, HLA‐B*44:493, detected in a potential hematopoietic stem cell donor //
Ananeva A., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. - V.96, Is.6, -.P 730-732
3. Characterization of the new HLA allele HLA-A*25:68 by next-generation sequencing //
Ananeva A., Leksina Y., Andryushkina A., Shagimardanova E. HLA. - 2020. - V.96, Is.5, -.P 627-628
4. Characterization of the new HLA‐B*35:482, detected in a potential hematopoietic stem cell donor //
Ananeva A., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
5. Characterization of three new HLA‐A*11 alleles in Russian individuals by next generation sequencing //
Ananeva A., Leksina Y., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
6. Detection of the HLA‐B*51:322 allele in a Russian individual //
Ananeva A., Osipova N., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
7. HLA‐A*02:934, identified in National bone marrow donor registry named after Vasya Perevoshchikov, Russian Federation //
Ananeva A., Shaihutdinova A., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
8. Identification of the novel HLA‐DQB1, allele DQB1*06:02:44 by next‐generation sequencing //
Ananeva A., Osipova N., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
9. The novel allele HLA-A*11:362 identified in two unrelated bone marrow donors from Russia //
Ananeva A., Sergeeva I., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
10. The novel HLA‐A*02:941 allele was identified during high‐resolution HLA typing //
Ananeva A., Leksina Y., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
11. Two novel HLA‐B variants identified in Russian individuals, HLA‐B*56:74 and ‐B*58:124 //
Ananeva A., Leksina Y., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
12. Identification of three new HLA‐DQB1 alleles: HLA‐DQB1*03:02:33, ‐DQB1*04:79 and ‐DQB1*05:249 //
Ananeva A., Osipova N., Shaihutdinova A., Andryushkina A., Shagimardanova E. HLA. - 2020. In press
13. Ratsional'naya strategiya izucheniya mikrobioma glaznoi poverkhnosti pol'zovatelei zhestkikh kontaktnykh linz metodom metabarkodinga po genu 16S rRNK [Rational strategy for studying microbiome of the ocular surface of people using hard contact lenses by method of 16S rRNA gene metabarcoding] //
Avetisov SE, Abramova ND, Gogoleva NE, Gusev OA et al. Vestn Oftalmol. 2020;136(3):3-9. doi:10.17116/oftalma20201360313
14. Diversity and Regulation of S-Adenosylmethionine Dependent Methyltransferases in the Anhydrobiotic Midge //
Deviatiiarov Ruslan, Rustam Ayupov, Alexander Laikov, Elena Shagimardanova, Takahiro Kikawada, and Oleg Gusev. 2020. Insects. https://doi.org/10.3390/insects11090634
15. A Synthetic Strong and Constitutive Promoter Derived from the Stellaria media pro-SmAMP1 and pro-SmAMP2 Promoters for Effective Transgene Expression in Plants //
Efremova, L.N.; Strelnikova, S.R.; Gazizova, G.R.; Minkina, E.A.; Komakhin, R.A. Genes 2020, 11, 1407.
16. Correction: Iron metabolic pathways in the processes of sponge plasticity //
Finoshin AD, Adameyko KI, Mikhailov KV, Gusev OA, Shagimardanova EI et al. PLoS One. 2020;15(3):e0230634. Published 2020 Mar 12. doi:10.1371/journal.pone.0230634
17. Iron metabolic pathways in the processes of sponge plasticity //
Finoshin AD, Adameyko KI, Mikhailov KV, Gusev OA, Shagimardanova EI et al. [published correction appears in PLoS One. 2020 Mar 12;15(3):e0230634]. PLoS One. 2020;15(2):e0228722. Published 2020 Feb 21. doi:10.1371/journal.pone.0228722
18. Hereditary sensory motor polyneuropathy //
E.L.Gabbasova, A.E. Komissarov, O.E. Agranovich, M.V. Savina, E.A. Kochenova, S.I. Trofimova, A.D. Slobodina, E. Shagimardanova, L. Shigapova, S.V. Sarantceva. Pediatric Traumatology, Orthopaedics and Reconstructive Surgery. -2020. -V.8. -I.3. -P.333-342
19. Transcriptomic data of Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S treated with novobiocin //
Gogoleva NE, Konnova TA, Balkin AS, Plotnikov AO, Gogolev YV. Data Brief. 2020;29:105297. Published 2020 Feb 17. doi:10.1016/j.dib.2020.105297
20. Dataset for transcriptome analysis of abscisic acid degrading bacterium Novosphingobium sp. P6W //
Gogoleva NE, Konnova TA, Ismailov TT, Balkin AS, Belimov AA, Gogolev YV. Data Brief. 2019;28:105001. Published 2019 Dec 16. doi:10.1016/j.dib.2019.105001
21. Bioinformatic Study of Transcriptome Changes in the Mice Lumbar Spinal Cord After the 30-Day Spaceflight and Subsequent 7-Day Readaptation on Earth: New Insights Into Molecular Mechanisms of the Hypogravity Motor Syndrome //
Kuznetsov MS, Lisukov AN, Rizvanov AA, Gusev OA et al. Front Pharmacol. 2019;10:747. Published 2019 Jul 11. doi:10.3389/fphar.2019.00747
22. Stimulation of adventitious root formation by the oligosaccharin OSRG at the transcriptome level //
Larskaya I., Gorshkov O., Mokshina N., Trofimova O., Mikshina P., Klepikova A., Gogoleva N., Gorshkova T. Plant Signal Behav. 2020;15(1):1703503.
23. Regulation of Proteins in Human Skeletal Muscle: The Role of Transcription //
Makhnovskii PA, Zgoda VG, Bokov RO, Gusev OA, Shagimardanova EI, Gazizova GR et al. Sci Rep. 2020;10(1):3514. Published 2020 Feb 26. doi:10.1038/s41598-020-60578-2
24. Microbiota composition data of imago and larval stage of the anhydrobiotic midge //
N. Shaikhutdinov, N. Gogoleva, O. Gusev, E. Shagimardanova. Data in Brief. -V. 33. December 2020, 106527
25. Lynch Syndrome Germline Mutations in Breast Cancer: Next Generation Sequencing Case-Control Study of 1,263 Participants //
Nikitin AG, Chudakova DA, Enikeev RF, Gusev OA, Shagimardanova EI, Shigapova LH et al. Front Oncol. 2020;10:666. Published 2020 May 29. doi:10.3389/fonc.2020.00666
26. PTPN11 Knockdown Prevents Changes in the Expression of Genes Controlling Cell Cycle, Chemotherapy Resistance, and Oncogene-Induced Senescence in Human Thyroid Cells Overexpressing BRAF V600E Oncogenic Protein //
Putlyaeva LV, Demin DE, Uvarova AN, Shagimardanova EI, Gazizova GR et al. Biochemistry (Mosc). 2020;85(1):108-118. doi:10.1134/S0006297920010101
27. Combined metabolome and transcriptome analysis reveals key components of complete desiccation tolerance in an anhydrobiotic insect //
Ryabova A, Cornette R, Cherkasov A, Watanabe M, Okuda T, Shagimardanova E, Kikawada T, Gusev O. Proc Natl Acad Sci U S A. 2020 Aug 11;117(32):19209-19220. doi: 10.1073/pnas.2003650117. Epub 2020 Jul 28. PMID: 32723826; PMCID: PMC7431039.
28. Inhibition of FGFR2-Signaling Attenuates a Homology-Mediated DNA Repair in GIST and Sensitizes Them to DNA-Topoisomerase II Inhibitors //
Sergei, B., Pavel, D., Aigul, G., Firyuza, B., Ilmira, N., Ilshat, M., Aida, A., Refat, K., Natalia, A., Elena, S., & Vera, G. (2020). International journal of molecular sciences, 21(1), 352. https://doi.org/10.3390/ijms21010352
29. Metagenomic analysis of mycobacterial transrenal DNA in patients with HIV and tuberculosis coinfection //
Sinkov VV, Ogarkov OB, Plotnikov AO, Gogoleva NE, et al. Infect Genet Evol. 2020;77:104057. doi:10.1016/j.meegid.2019.104057
30. Genetic algorithm-based personalized models of human cardiac action potential //
Smirnov D, Pikunov A, Syunyaev R, Deviatiiarov R, Gusev O, et al. (2020). PLOS ONE 15(5): e0231695. doi.org/10.1371/journal.pone.0231695
31. Development of a Tet-On Inducible Expression System for the Anhydrobiotic Cell Line, Pv11 //
Tokumoto S, Miyata Y., Usui K., Deviatiiarov R., Ohkawa T., Kondratieva S.,Shagimardanova E., Gusev O., Cornette R.,Itoh M., Hayashizaki Y., Kikawada T. Insects 2020, 11(11), 781. https://doi.org/10.3390/insects11110781.
32. New group of transmembrane proteins associated with desiccation tolerance in the anhydrobiotic midge Polypedilum vanderplanki //
Voronina, T. A., Nesmelov, A. A., Kondratyeva, S. A., Deviatiiarov, R. M., Miyata, Y., Tokumoto, S., … Shagimardanova, E. I. (2020). Scientific Reports, 10(1), 1–13. https://doi.org/10.1038/s41598-020-68330-6
33. Identification of a master transcription factor and a regulatory mechanism for desiccation tolerance in the anhydrobiotic cell line Pv11 //
Yamada TG, Hiki Y, Hiroi NF, Gusev OA, Shagimardanova EI et al. PLoS One. 2020;15(3):e0230218. Published 2020 Mar 19. doi:10.1371/journal.pone.0230218
34. Comparison of the Microbiota and Inorganic Anion Content in the Saliva of Patients with Gastroesophageal Reflux Disease and Gastroesophageal Reflux Disease-Free Individuals //
Ziganshina EE, Sagitov II, Akhmetova RF, Shagimardanova EI, Gogoleva NE et al. Biomed Res Int. 2020;2020:2681791. Published 2020 May 13. doi:10.1155/2020/2681791
35. A 300-kb microduplication of 7q36.3 in a patient with triphalangeal thumb-polysyndactyly syndrome combined with congenital heart disease and optic disc coloboma: a case report //
Zlotina A, Melnik O, Fomicheva Y, Skitchenko R, Sergushichev A, Shagimardanova E, Gusev O, Gazizova G, Loevets T, Vershinina T, Kozyrev I, Gordeev M, Vasichkina E, Pervunina T, Kostareva A. BMC Med Genomics. 2020 Nov 20;13(1):175. doi: 10.1186/s12920-020-00821-x. PMID: 33218365; PMCID: PMC7678048.
2019
1. Contractile activity-specific transcriptome response to acute endurance exercise and training in human skeletal muscle. Daniil V. Popov, Pavel A. Makhnovskii, Elena I. Shagimardanova, Guzel R. Gazizova, Evgeny A. Lysenko, Oleg A. Gusev,and Olga L. Vinogradova. Am J Physiol Endocrinol Metab. 2019 Apr 1;316(4):E605-E614. doi: 10.1152/ajpendo.00449.2018
2. Data on the genome analysis of the probiotic strain Bacillus subtilis GM5. Hadieva, G.F., Lutfullin, M.T., Pudova, D.S., Akosah, Y.A., Gogoleva, N.E., Shagimardanova E.I., Mardanova, A.M., Sharipova, M.R. Data in Brief. Volume 23, April 2019, Номер статьи 103643
3. Draft genome sequence and analysis of Klebsiella oxytoca strain NK-1 isolated from ureteral stent. Giliazeva, A.G., Shagimardanova, E.I. Shigapova, L.H., Pudova, D.S., Sharipova, M.R., Mardanova, A.M. Data in Brief Volume 24, June 2019, Номер статьи 103853
4. Identification of a novel strong promoter from the anhydrobiotic midge, Polypedilum vanderplanki, with conserved function in various insect cell lines. Miyata, Y., Tokumoto, S., Sogame, Y., Deviatiiarov, R., Okada, J. Cornette, R., Gusev, O. Shagimardanova, E., Sakurai, M., Kikawada, T. Scientific Reports Volume 9, Issue 1, 1 December 2019, Номер статьи 7004
5. Comparative Genome Analysis of Uropathogenic Morganella morganii Strains. Minnullina L, Pudova D, Shagimardanova E, Shigapova L, Sharipova M and Mardanova A (2019). Front. Cell. Infect. Microbiol. 9:167. doi: 10.3389/fcimb.2019.00167
6. 29P Heterozygous mutation in fanconi anemia genes associated with hereditary breast cancer. M Gordiev, O Brovkina, L H Shigapova, E Shagimardanova, R F Enikeev, A Nikitin, V Petkau, A Aksarin, E Ovchinnikova, D Sakaeva. Annals of Oncology, Volume 30, Issue Supplement_3, May 2019, mdz 095.028, https://doi.org/10.1093/annonc/mdz095.028
7. Bioinformatic Analysis of the Sciatic Nerve Transcriptomes of Mice after 30-Day Spaceflight on Board the Bion-M1 Biosatellite. Kuznetsov M. S., Rezvyakov P. N., Lisyukov A.N., Gusev O. A., Nikolskiy E.E., Islamov R. R. Russian Journal of Genetics. March 2019, Volume 55, Issue 3, pp 388–392
2018
1. The Ethnic-Specific Spectrum of Germline Nucleotide Variants in DNA Damage Response and Repair Genes in Hereditary Breast and Ovarian Cancer Patients of Tatar Descent
Olga I. Brovkina, Leila Shigapova, Daria A. Chudakova, Marat G. Gordiev, Rafael F. Enikeev, Maxim O. Druzhkov, Dmitriy S. Khodyrev, Elena I. Shagimardanova, Alexey G. Nikitin and Oleg A. Gusev. Front.Oncol., 02 October 2018| https://doi.org/10.3389/fonc.2018.00421
2. The Antioxidant System in the Anhydrobiotic Midge as an Essential, Adaptive Mechanism for Desiccation Survival
Alexander Nesmelov, Richard Cornette, Oleg Gusev, and Takahiro Kikawada. Survival Strategies in Extreme Cold and Desiccation. Adaptation Mechanisms and Their Applications. Editors: Iwaya-Inoue, Mari, Sakurai, Minoru, Uemura, Matsuo. 2018. Pages 259-270
3. Nucleic Acid Amplification-Based Diagnostics for Pulmonary Diseases: What Is the Current State and Perspectives of Nucleic Acid Amplification Technologies Used in Diagnostics Associated with Pulmonary Diseases?
Oleg Gusev, Yoshihide Hayashizaki, Kengo Usui. Clinical Relevance of Genetic Factors in Pulmonary Diseases. 13 July 2018. PP 333-344
4. Cooption of heat shock regulatory system for anhydrobiosis in the sleeping chironomid Polypedilum vanderplanki
Pavel V. Mazin, Elena Shagimardanova, Olga Kozlova, Alexander Cherkasov, Romаn Sutormin, Vita V. Stepanova, Alexey Stupnikov, Maria Logacheva, Aleksey Penin, Yoichiro Sogame, Richard Cornette, Shoko Tokumoto, Yugo Miyata, Takahiro Kikawada, Mikhail S. Gelfand, and Oleg Gusev. PNAS March 6, 2018. 115 (10) E2477-E2486; published ahead of print February 20, 2018. https://doi.org/10.1073/pnas.1719493115
5. 240PLandscape of germline mutations in hereditary breast and ovarian cancer (HBOC) patients in Russia revealed by target panel sequencing
E. Shagimardanova, L. H. Shigapova, R. F. Enikeev, M. Druzhkov, A. Nikitin, O. Gusev, M. Gordiev. Annals of Oncology, Volume 29, Issue suppl_8, 1 October 2018, mdy270.235,https://doi.org/10.1093/annonc/mdy270.235
6. 241Lynch syndrome-associated hereditary mutations cause breast and ovarian cancer: Results from Russian Heredetary Oncogenomics project
M. Gordiev, L. H. Shigapova, O. Brovkina, R. F. Enikeev, M. Druzhkov, A. Nikitin, E. Shagimardanova, O. Gusev. Annals of Oncology, Volume 29, Issue suppl_8, 1 October 2018, mdy270.236,https://doi.org/10.1093/annonc/mdy270.236
7. Involvement of Heat Shock Proteins in Invertebrate Anhydrobiosis
Alexander Nesmelov, Elena Shagimardanova, Takahiro Kikawada, Oleg Gusev. In book: Heat Shock Proteins and Stress, pp.179-192
8. Transcriptome analysis of Pv11 cells infers the mechanism of desiccation tolerance and recovery
Takahiro Yamada, Yoshitaka Suetsugu, Ruslan Deviatiiarov, Oleg Gusev, Richard Cornette, Alexander Nesmelov, Noriko Hiroi, Takahiro Kikawada, Akira Funahashi. Preprint (PDF Available) ? July 2018 DOI: 10.1101/368175
9. Integrative Transcription Start Site Analysis and Physiological Phenotyping Reveal Torpor-Specific Expressions in Mouse Skeletal Muscle
Genshiro Sunagawa, Ruslan Deviatiiarov, Kiyomi Ishikawa, Guzel Gazizova, Oleg Gusev, Masayo Takahashi. Preprint (PDF Available) ? August 2018 DOI: 10.1101/374975
10. Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae)
Waleed S. Mohammed, Elvira E. Ziganshina, Elena I. Shagimardanova, Natalia E. Gogoleva & Ayrat M. Ziganshin. Scientific Reports. Volume 8, Article number: 10073 (2018)
11. Fungal, Bacterial, and Archaeal Diversity in the Digestive Tract of Several Beetle Larvae (Coleoptera).
Ziganshina EE, Mohammed WS, Shagimardanova EI, Vankov PY, Gogoleva NE, Ziganshin AM. Biomed Res Int. 2018 Apr 16;2018:6765438. doi: 10.1155/2018/6765438. eCollection 2018.
12. Draft genome sequence of Brevibacterium epidermidis EZ-K02 isolated from nitrocellulose-contaminated wastewater environments
Ziganshina EE, Mohammed WS, Doijad SP, Shagimardanova EI, Gogoleva NE, Ziganshin AM. Data Brief. 2018 Jan 3;17:119-123. doi: 10.1016/j.dib.2017.12.053. eCollection 2018 Apr.
