Research
Research work is executing in accordance to the project ESA KFU "Investigation of medical and biological systems by physical methods" (29.03.37, 34.17) (Heads: prof. A.V. Aganov, prof. V.D. Skirda ) in following areas:
Publications:
2017
- Galiullina, L.F., Interaction of different statins with model membranes by NMR data/Galiullina, L.F., Aganova, O.V., Latfullin, I.A., Musabirova, G.S., Aganov, A.V., Klochkov, V.V.// Biochimica et Biophysica Acta – Biomembranes. – 2017. – V. 1859, Issue 3. – P.295-300.
- Il'yasov, K. A., Validation of MRI-Based Fiber-Tracking Results / Il'yasov, K. A., Konopleva, L. V., Nedopekin, O. V. // APPLIED MAGNETIC RESONANCE. – 2017. – V. 48, №. 3. – С.241-254.
- Rakhmatullin, I.Z. Stereodynamics of some pyridoxine derivatives studied by dynamic and 2D NOESY 1H NMR /I.Z. Rakhmatullin, L.F. Galiullina, A.A. Balandina, M.R. Garipov, A.D. Strelnik, A.S. Galiullina, Y.G. Shtyrlin, V.V. Klochkov // Magnetic Resonance in Chemistry. – 2017. – V.55, Issue 4. – P. 304-311. IPP 1.537; ISSN: 07491581. DOI: 10.1002/mrc.4528
- Usachev, K.S. Oligomerization of the antimicrobial peptide Protegrin-5 in membrane mimicking environment. Structural studies by high-resolution NMR spectroscopy [text] / K.S. Usachev, O.A. Kolosova, E.A. Klochkova, A.R. Yulmetov, A.V. Aganov, V.V. Klochkov // European Biophysics Journal.- 2017.- V.46, Issue 3.- P.293-300. ISSN: 0175-7571. DOI 10.1007/s00249-016-1167-5.
- Abdrakhmanov, R. NMR Studies of the Mn2+ Interactions with Amyloid Peptide Aβ13-23 in Water Environment [text] / R. Abdrakhmanov, D. Blokhin, K. Usachev, F. Karataeva, V. Klochkov // BioNanoScience. – 2017. – V. 7. – P. 204-206. ISSN: 2191-1630. DOI 10.1007/s12668-016-0317-7.
- Rakhmatullin, I.Z. Qualitative and quantitative analysis of oil samples extracted from some Bashkortostan and Tatarstan oilfields based on NMR spectroscopy data [text] /I.Z. Rakhmatullin, S.V. Efimov, B.Ya. Margulis, V.V. Klochkov// Journal of Petroleum Science and Engineering. – 2017. – V.156. – P.12-18. ISSN: 0920-4105.
2016
- Efimov, S.V. Detailed NOESY/T-ROESY Analysis as an Effective Method for Eliminating Spin-Diffusion in 2D NOE Spectra of Small Flexible Molecules [Text] /S.V. Efimov, I.A. Khodov, E.L. Ratkova, M.G. Kiselev, S. Berger, V.V. Klochkov// Journal of Molecular Structure. – 2016.- V. 1104. - P. 63-69. –ISSN: 00222860; IPP 1.549
- Rakhmatullin, I.Z. Structural studies of pravastatin and simvastatin and their complexes with membrane-like objects by NMR spectroscopy [Text] / I.Z. Rakhmatullin, L.F. Galiullina, E.A. Klochkova, I.A. Latfullin, A.V. Aganov, V.V. Klochkov // Journal of Molecular Structure. – 2016.- V.1105. - P. 25-29. –ISSN: 00222860; IPP 1.549
- Khodov, I.A. The Importance of Suppressing Spin Diffusion Effects in Determination of the Spatial Structure of a Flexible Molecule by Nuclear Overhauser Effect Spectroscopy [Text] / I.A. Khodov, S.V. Efimov, M.G. Kiselev, V.V. Klochkov, L.A.E. Batista de Carvalho// Journal of Molecular Structure. – 2016.- V. 1106. - P. 373-381. –ISSN: 00222860; IPP 1.549
- Khodov, I.A. Document Erratum: The importance of suppressing spin diffusion effects in the accurate determination of the spatial structure of a flexible molecule by nuclear Overhauser effect spectroscopy (Journal of Molecular Structure (2016) 1106 (373-381)) [Text] / I.A. Khodov, S.V. Efimov, M.G. Kiselev, L.A.E. Batista de Carvalho, V.V. Klochkov // Journal of Molecular Structure. – 2016.- V. 1113. - P. 191-192. –ISSN: 00222860; IPP 1.549
- Polshakov, V.I. NMR assignments of the N-terminal domain of Ogataea polymorpha telomerase reverse transcriptase [Text] /V.I. Polshakov, O.A. Petrova, Yu.Yu. Parfenova, S.V. Efimov, V.V. Klochkov, M.I. Zvereva, O.A. Dontsova // Biomolecular NMR Assignments. – 2016.- V. 10, Issue 1. –P. 183-187. IPP 0.475; ISSN: 1874-2718; DOI:10.1007/s12104-015-9663-6
- Akhmadullin, R.M. Polyquinone synthesis by dehydrogenation agent 3,3ʹ,5,5ʹ-tetra-tert-butyl- 4,4ʹ-diphenoquinone. [Text] / .M. Akhmadullin, D.R. Gatiyatullin, A.G. Akhmadullina, L.V. Verizhnikov, N.A. Mukmeneva, A.R. Gazizov, L.R. Tagirov, V.V. Klochkov, B.V. Yavkin, S.B. Orlinskii, T.F. Nigmatullin // Res. J. Pharm. Biol. Chem. Sci.- 2016.-V. 7, Issue 2. – P. 577-585. ISSN: 09758585
- Khodov, I.A. Comment on “Conformational analysis of small organic molecules using NOE and RDC -methylene-γ-butyrolactone” [Text] / I.A. Khodov, M.G. Kiselev, S.V. Efimov, V.V. Klochkov // Journal of Magnetic Resonance. – 2016. – V. 266. P. 67-68. http://dx.doi.org/10.1016/j.jmr.2016.02.009
- Mironov, Vladimir. Stereoselective PCO/POC-Rearrangement of P–C-Cage Phosphorane in the Reaction of 4,5-Dimethyl-2-(2-oxo-1,2-diphenyl)ethoxy-1,3,2-dioxaphospholane with Hexafluoroacetone [Text] /Mironov, Vladimir; Dimukhametov, Mudaris; Efimov, Sergey; Aminova, Roza; Karataeva, Farida; Krivolapov, Dmitry; Mironova, Ekaterina; Klochkov, Vladimir// Journal of Organic Chemistry.- 2016 -V 81, Issue 14.- P. 5837-5850. ID: jo-2016-003563.R1
- Rakhmatullin I.Z. 1H NMR Characterization of Two New Pyridoxine Derivatives / I.Z. Rakhmatullin, L.F. Galiullina, M.R. Garipov, A.D. Strel'nik, Y.G. Shtyrlin, V.V. Klochkov // BioNanoScience. – 2016. – V.6(3) – P. 243-245
- Aganova, O.V. Synthesis and NMR study of conformational structure and dynamics of the new quarternary phosphonium salts [Text] / O.V. Aganova, L.F. Galiullina, A.V. Aganov, N.V. Shtyrlin, M.V. Pugachev, A.D. Strel'nik, S.A. Koshkin, Yu.G. Shtyrlin, V.V. Klochkov // Magnetic Resonance in Chemistry. – 2016. – V. 54, Issue 6. – P. 320-327. IPP 1.226; ISSN: 07491581
- Usachev, Konstantin S. Oligomerization of the antimicrobial peptide Protegrin-5 in membrane mimicking environment. Structural studies by high-resolution NMR spectroscopy [text] /Konstantin S. Usachev, Olga A. Kolosova, Evelina A. Klochkova, Aidar R. Yulmetov, Albert V. Aganov, Vladimir V. Klochkov// European Biophysics Journal.- 2016.- accept for publication. DOI 10.1007/s00249-016-1167-5
- Galiullina L.F. NMR study of conformational structure of fluvastatin and its complex with DPC micelles [Text] / Galiullina L.F., Aganova O.V., Latfullin I.A., Musabirova G.S., Aganov A.V., Klochkov V.V.// BioNanoScience. – 2016. – V. 6, N4 – P. 352-354. DOI 10.1007/s12668-016-0232-y
- Filippov A.V. Effect of curcumin on lateral diffusion in lipid bilayers [Text] /Filippov A.V, Kotenkov S.A.,Munavirov B. V., Khaliullina A.V., Gnezdilov O.I., Antzutkin O.N. // Journal of Mendeleev Communications.- 2016.- v.26.- pp.109-110.
- Kolosova, Olga A. Antimicrobial Peptide Protegrins Interact with DPC Micelles by Apolar Hydrophobic Cluster: Structural Studies by High-Resolution NMR Spectroscopy /Olga A. Kolosova, Konstantin S. Usachev, Albert V. Aganov, Vladimir V. Klochkov// BioNanoScience. – 2016. – V.6, N4.- P.317-319. DOI 10.1007/s12668-016-0218-9
- Rakhmatullin, I.Z. Stereodynamics of some pyridoxine derivatives studied by dynamic and 2D NOESY 1H NMR [text] /I.Z. Rakhmatullin, L.F. Galiullina, A.A. Balandina, M.R. Garipov, A.D. Strelnik, A.S. Galiullina, Y.G. Shtyrlin, V.V. Klochkov// Magnetic Resonance in Chemistry. – 2016. – accept for publication. IPP 1.537; ISSN: 07491581. DOI: 10.1002/mrc.4528
- Abdrakhmanov, R. NMR Studies of the Mn2+ Interactions with Amyloid Peptide Aβ13-23 in Water Environment [Text] / Rustam Abdrakhmanov, Dmitriy Blokhin, Konstantin Usachev, Farida Karataeva, Vladimir Klochkov// BioNanoScience. – 2016. - accept for publication. DOI 10.1007/s12668-016-0317-7
- Davletbaeva, I.M. Porous polyurethanes based on hyperbranched amino ethers of boric acid [text] / I. Davletbaeva, G. R. Nurgaliyeva, A. Akhmetshina, R. Davletbaev, A. A. Atlaskin, T. Sazanova, V. Klochkov, S. Efimov and I. V. Vorotyntsev//RSC Advances.- 2016.- V.6. P. 111109-111119. DOI: 10.1039/C6RA21638B
- Nikitina, Liliya E. Extraordinary Behavior of β-Hydroxy Sulfoxides and Sulfone of Pinane Series [text] / Liliya E. Nikitina, Olga A. Lodochnikova, Valeriya A. Startseva, Andrei V. Bodrov, Nadezhda P. Artemova, Alexander E. Klimovitskii, Vladimir V. Klochkov// Phosphorus, Sulfur, and Silicon and the Related Elements.- 2016.- http://dx.doi.org/10.1080/10426507.2016.1255619 - accept for publication
- Sokurenko, Yulia The Role of Metals in the Reaction Catalyzed by Metal-Ion-Independent Bacillary RNase [text] / Yulia Sokurenko, Vera Ulyanova, Pavel Zelenikhin, Alexey Kolpakov, Dieter Müller, Dmitriy Blokhin, Vladimir Klochkov and Olga Ilinskaya //Bioinorganic Chemistry and Applications .- 2016.- accept for publication . IF 1.488
- Konkin, A. Light-induced X,W-band Electron Spin Resonance study of double-crystalline donor-acceptor P3HT-b-PPerAcr block copolymers in solid thin films / A. Konkin, C.R. Singh , S. Orlinskii , G. Mamin , A. Aganov , R. Lohwasser , U. Ritter , P. Scharff , M. Thelakkat , H. Hoppe // Synthetic Metals. – 2016. – V.215. – P. 251–259
- Gafurov, M. R. Study of the effects of hydroxyapatite nanocrystal codoping by pulsed electron paramagnetic resonance methods / M.R. Gafurov, T.B. Biktagirov, G.V. Mamin // PHYSICS OF THE SOLID STATE. - 2016. - Vol.58, Is.3. - P.469-474
- Galukhin, A.V. Mn-catalyzed oxydation of heavy oil in porous media: kinetics and some aspects of mechanism / A.V. Galukhin, M.A. Khelkhal, A.V. Gerasimov, T.B. Biktagirov, M.R Gafurov, A.A. Rodionov, S.B. Orlinskii // Energy and Fuels. - 2016. - V. 30. - P. 7731−7737
- Mamin, G.V. Toward the Asphaltene Structure by Electron Paramagnetic Resonance Relaxation Studies at High Fields (3.4 T) / Mamin G.V, Gafurov M.R, Yusupov R.V, Gracheva I.N, Ganeeva Yu.M, Yusupova T.N., Orlinskii S.B. // Energy and Fuels. - 2016. - Vol.30, Is.9. - P.6942-6946.
- Burlaka, A.P. Stomach Cancer: Interconnection between the Redox State, Activity of MMP-2, MMP-9 and Stage of Tumor Growth / A.P. Burlaka, I.I. Ganusevich, M.R. Gafurov //Cancer Microenvironment. - 2016. - Vol.9, Is.1. - P.27-32
- Salakhieva D. V. Kinetic regulation of multi-ligand binding proteins [Text] /D.V. Salakhieva, I.I. Sadreev, Michael Z.Q. Chen, Y. Umezawa, A.I. Evstifeev, G.I. Welsh, N. V. Kotov // BMC Systems Biology. –2016. – V.10. –P. 32. – ISSN:17520509
- Gafurov, M. Connection Between the Carotid Plaque Instability and Paramagnetic Properties of the Intrinsic Mn2+ Ions / M. Gafurov, Y. Chelyshev, I. Ignatyev, A. Zanochkin, G. Mamin, K. Iskhakova, A. Kiiamov, F. Murzakhanov, S. Orlinskii // BioNanoSci. – 2016. – Vol.6. – P.558–560. DOI 10.1007/s12668-016-0274-1
- Burlaka, A. P. Electron Paramagnetic Resonance in the Experimental Oncology: Implementation Examples of the Conventional Approaches / A.P. Burlaka, M.R. Gafurov, K.B. Iskhakova, S.M. Lukin, A.A. Rodionov, E.P. Sidorik, A.V. Vovk // BioNanoSci. – 2016. – Vol.6. – P.431–436. DOI 10.1007/s12668-016-0238-5
- Litvinov, R. I. Characterization of the interactions of Arg-Gly-Asp- and Ala-Gly-Asp-Val-peptides with the platelet integrin αIIbβ3 [text] /R. I. Litvinov, O. Kononova, D. S. Blokhin, V. V. Klochkov, J. W. Weisel, V. Barsegov, J. S. Bennett // Blood .- 2016.- V.128, Issue 22. - P.1350. IPP 11,841.
- Suchkov, D. Attenuation of the Early Gamma Oscillations During the Sensory-Evoked Response in the Neonatal Rat Barrel Cortex / D. Suchkov, M. Sintsov, L. Sharipzyanova, R. Khazipov // Bionanoscience. - 2016. - Vol. 6, Issue 4. - Р. 575–577 doi:10.1007/s12668-016-0289-7
- Akhmetshina, D. The Nature of the Sensory Input to the Neonatal Rat Barrel Cortex / D. Akhmetshina, A. Nasretdinov, A. Zakharov, G. Valeeva, R. Khazipov // J. Neurosci. - 2016. - Vol. 36, № 38. - P. 9922–9932.
- Akhmetshina, D. The serotonin reuptake inhibitor citalopram suppresses activity in the neonatal rat barrel cortex in vivo / D. Akhmetshina, A. Zakharov, D. Vinokurova, A. Nasretdinov, G. Valeeva, R. Khazipov // Brain Res. Bull. - 2016. - Vol. 124. - P. 48–54.
- Inácio, A.R. Sensory feedback synchronizes motor and sensory neuronal networks in the neonatal rat spinal cord / A.R. Inácio, A. Nasretdinov, J. Lebedeva, R. Khazipov // Nat. Commun. - 2016. - Vol. 7, № 13060. - P. 1–14.
- Valiullina, F. Developmental changes in electrophysiological properties and a transition from electrical to chemical coupling between excitatory Layer 4 neurons in the rat barrel cortex / F. Valiullina, D. Akhmetshina, A. Nasretdinov, M. Mukhtarov, G. Valeeva, R. Khazipov, A. Rozov // Front. Neural Circuits. - 2016. - Vol. 10, № 1. - P. 1–13.
- Nasretdinov, A. Follicular Nerve Evoked Responses in the Neonatal Rat Barrel Cortex / A. Nasretdinov, D. Akhmetshina, G. Valeeva, R. Khazipov // BioNanoSci. - 2016. - Vol. 6, № 4. - P. 373–375.
- Juzekaeva, E. Modified Recording Chamber for Sustained Kainate-Induced Gamma Oscillations in Submerged Rat Hippocampal Slices / E. Juzekaeva, A. Nasretdinov, M. Mukhtarov // BioNanoSci. - 2016. - doi:10.1007/s12668-016-0313-y. - [Epub ahead of print].
- Vinokurova, D. The Effects of Fluoxetine on Sensory-Evoked Responses in the Neonatal Rat Barrel Cortex / D. Vinokurova, A. Zakharov, D. Akhmetshina, A. Nasretdinov, G. Valeeva, R. Khazipov // BioNanoSci. - 2016. - doi:10.1007/s12668-016-0370-2. - [Epub ahead of print].
2015
- Galiullina, L.F. Structure of pravastatin and its complex with sodium dodecyl sulfate micelles studied by NMR spectroscopy / L.F. Galiullina, I.Z. Rakhmatullin, E.A. Klochkova, A.V. Aganov, V.V. Klochkov // Magnetic Resonance in Chemistry. – 2015. – V. 53 (2). – P. 110-114. DOI: 10.1002/mrc.4146. IPP 1.537; ISSN: 07491581.
- Bodrov, A.V. Reactions of (+)-Camphene with Dithiols / A.V.Bodrov, V.A. Startseva, R.Z.Musin, O.A.Lodochnikova, V.V. Klochkov, A.S. Galstyan, L.E. Nikitina // Chemistry of Natural Compounds. - 2015. – V. 51, N. 2.- P. 372-374. DOI: 10.1007/s10600-015-1288-6. ISSN: 00093130.
- Startseva, V.A. Hetarenesulfenyl(selenyl) Chlorination of (+)-Camphene / V.A. Startseva, I.V. Kuznetsov, L.E. Nikitina, V.K. Osmanov, A.V. Borisov, Zh.V. Matsulevich, V.V. Klochkov// Chemistry of Natural Compounds. - 2015. – V. 51, N. 4.- P. 671-674. DOI: 10.1007/s10600-015-1381-x. ISSN: 00093130.
- Rakhmatullin, I.Z. Dynamic NMR study of dinitrophenyl derivatives of seven-membered cyclic ketals of pyridoxine [Text] / I.Z. Rakhmatullin, L.F. Galiullina, M.R. Garipov, A.D. Strelnik, Y.G. Shtyrlin, V.V. Klochkov // Magnetic Resonance in Chemistry. – 2015. – Vol. 53, No.10. – P. 805-812. IPP 1.537;
- Aminova R.M. A quantum chemical study of an interaction between collagen fragments and calcium ions using calculations of model complexes / R.M. Aminova, L.F. Galiullina, V.V. Klochkov, A.V. Aganov // Russian Chemical Bulletin. – 2015. – V. 64 (1). – P. 210-215.
- Usachev, K.S. High-resolution NMR structure of the antimicrobial peptide protegrin-2 in the presence of DPC micelles / K.S. Usachev, S.V. Efimov, O.V. Kolosova, A.V. Filippov, V.V. Klochkov //Journal of Biomolecular NMR.-2015.– V.61. - P. 227-234. DOI: 10.1007/s10858-014-9885-4; Print ISSN: 0925-2738; Online ISSN: 1573-5001.
- Usachev, K.S. Antimicrobial peptide protegrin-3 adopt an antiparallel dimer in the presence of DPC micelles. A high-resolution NMR study / K.S. Usachev, S.V. Efimov, O.A. Kolosova, E.A. Klochkova, A.V. Aganov, V.V.Klochkov // Journal of Biomolecular NMR. – 2015. - V.62. - P. 71-79. DOI: 10.1007/s10858-015-9920-0; Print ISSN: 0925-2738; Online ISSN: 1573-5001.
- Blokhin, D.S. Spatial Structures of PAP(262–270) and PAP(274–284), Two Selected Fragments of PAP(248–286), an Enhancer of HIV Infectivity / D.S.Blokhin, A.V.Filippov, O.N. Antzutkin, S. Afonin, V.V. Klochkov // Applied Magnetic Resonance.- 2015.- V. 46 Issue: 7 - P. 757-769. Published: JUL 2015. DOI:10.1007/s00723-015-0669-0; Print ISSN0937-9347.
- Usachev, K.S. Structure of amyloid-beta peptides in a complex with model membranes [text] / K.S. Usachev, A.V. Filippov, V.V. Klochkov // Tsitologiya.- 2015.-V. 65, Issue 6 – P. 453-455. ISSN: 00413771.
- Bikmullin, Aidar G. Analysis of Bovine Serum Albumine, Caseine and Tryptone Proteins Hydrolysis by 1H NMR Spectroscopy / Aidar G Bikmullin, Farida K Alimova, Albert V Aganov, Vladimir V Klochkov, and Konstantin S Usachev .// Res. J. Pharm. Biol. Chem. Sci.- 2015.-V. 6, Issue 4. – P. 25-31. ISSN: 09758585
- Blokhin, D.S. Spatial structure of fibrinopeptide b in water solution with dpc micelles by NMR spectroscopy / D.S. Blokhin, A.R. Fayzullina, F.K. Karataeva, A.V. Filippov, V.V. Klochkov // Journal of Molecular Structure. – 2015. – V.1102. – P.91-94.–ISSN: 00222860; IPP 1.549
- Saveliev, A. Bayesian analysis of the kinetics of quantal transmitter secretion at the neuromuscular junction / A. Saveliev, V. Khuzakhmetova, D. Samigullin, A. Skorinkin, I. Kovyazina, E. Nikolsky, E. Bukharaeva // Journal of Computational Neuroscience. – 2015. – Vol. 39, N2. – P.119-129.
- Zakharov, A. Front. Hunting for origins of migraine pain: cluster analysis of spontaneous and capsaicin-induced firing in meningeal trigeminal nerve fibers / A. Zakharov, C. Vitale, E. Kilinc, K. Koroleva, D. Fayuk, I. Shelukhina, N. Naumenko, A. Skorinkin, R. Khazipov and R. Giniatullin // Cell. Neurosci. – 2015. – Vol.9, article 287. – P.1-14.
- Bazanovas, A.N. Erythrocyte: A systems model of the control of aggregation and deformability / A.N. Bazanovas, A.I. Evstifeev, S.F. Khaiboullina, I.I. Sadreev, A.I. Skorinkin, N.V.Kotov // BioSystems. – 2015. – Vol. 131. – P. 1-8.
- Mukhamedshina, Y.O. Adenoviral vector carrying glial cell-derived neurotrophic factor for direct gene therapy in comparison with human umbilical cord blood cell-mediated therapy of spinal cord injury in rat / Y.O. Mukhamedshina, G.F. Shaymardanova, Е.Е. Garanina, I.I. Salafutdinov, А.А. Rizvanov, R.R. Islamov, Y.A. Chelyshev // Spinal Cord. – 2015. – Sep. 29. doi: 10.1038/sc.2015.161. PMID: 26415641.
- Lodochnikova, O. A. S=O...S=O Interactions as a Driving Force for Low-Temperature Conformational Rearrangement of Stable H-bonding {S(O)-CH2-CH2-OH}2 Synthon in Two Modifications of Diastereomeric Pinanyl Sulfoxides Co-Crystal / O.A. Lodochnikova, D.B. Krivolapov, V.A. Startseva, L.E. Nikitina, A.V. Bodrov, N.P. Artemova, V.V. Klochkov, T.I. Madzhidov, G.A. Chmutova, I.A. Litvinov // Phosphorus, Sulfur and Silicon and the Related Elements - 2015.-V. 190, Issue: 12.- P. 2222 - 2231.
- Samigullin, D. Estimation of presynaptic calcium currents and endogenous calcium buffers at the frog neuromuscular junction with two different calcium fluorescent dyes / D. Samigullin, N. Fatikhov, E. Khaziev, A. Skorinkin, E. Nikolsky, E. Bukharaeva. // Front. Synaptic Neurosci. - 2015. -Vol.6, article 29. – P.1-10.
- Usachev, K. S. The Effect of the Detergent Micelles Type on the Tetrapeptide NAc-SFVG-OMe Conformational Structure: NMR Studies in Solution / K. S. Usachev, E.A. Klochkova, A. R. Yulmetov, V. V. Klochkov // Res. J. Pharm. Biol. Chem. Sci.- 2015.-V. 6, Issue 6. – P. 1630-1636.