• Ziganshina, E.E.; Ziganshin, A.M. Influence of Nutrient Medium Composition on the Redistribution of Valuable Metabolites in the Freshwater Green Alga Tetradesmus obliquus (Chlorophyta) Under Photoautotrophic Growth Conditions. BioTech 2025, 14, 60.
• Ziganshina, E.E.; Yureva, K.A.; Ziganshin, A.M. Poultry Slaughterhouse Wastewater Treatment by Green Algae: An Eco-Friendly Restorative Process. Environments 2025, 12, 331.

• Ziganshina EE, Ziganshin AM. Magnetite Nanoparticles and Carbon Nanotubes for Improving the Operation of Mesophilic Anaerobic Digesters // Microorganisms. - 2023. - Vol.11, Is.4. - Art. №938.
• Bulynina SS, Ziganshina EE, Ziganshin AM. Growth Efficiency of Chlorella sorokiniana in Synthetic Media and Unsterilized Domestic Wastewater // BioTech. - 2023. - Vol.12, Is.3. - Art. №53.
• Ziganshina EE, Bulynina SS, Yureva KA, Ziganshin AM. Optimization of Photoautotrophic Growth Regimens of Scenedesmaceae alga: The Influence of Light Conditions and Carbon Dioxide Concentrations // APPLIED SCIENCES-BASEL. - 2023. - Vol.13, Is.23. - Art. №12753.
• Ziganshina EE, Mohammed WS, Ziganshin AM. Microbial Diversity of the Produced Waters from the Oilfields in the Republic of Tatarstan (Russian Federation): Participation in Biocorrosion // APPLIED SCIENCES-BASEL. - 2023. - Vol.13, Is.24. - Art. №12984.
• Ziganshina EE, Bulynina SS, Ziganshin AM. Semi-continuous cultivation of indigenous Chlorella sorokiniana for biomass and pigment production // E3S Web of Conferences. - 2023. - Vol.431, Is.. - Art. №01021.

• Ziganshina E.E, Bulynina S.S, Ziganshin A.M. Impact of Granular Activated Carbon on Anaerobic Process and Microbial Community Structure during Mesophilic and Thermophilic Anaerobic Digestion of Chicken Manure//Sustainability. - 2022. - Vol.14, Is.1. - Art. №447.
• Ziganshina E.E, Bulynina S.S, Ziganshin A.M. Growth Characteristics of Chlorella sorokiniana in a Photobioreactor during the Utilization of Different Forms of Nitrogen at Various Temperatures//Plants. - 2022. - Vol.11, Is.8. - Art. №1086.
• Ziganshina E.E., Bulynina S.S., Yureva K.A., Ziganshin A.M. Growth Parameters of Various Green Microalgae Species in Effluent from Biogas Reactors: The Importance of Effluent Concentration//Plants. - 2022. - Vol.11, Is.24. - Art. №3583.
• Ziganshina E.E., Bulynina S.S., Ziganshin A.M. Anaerobic Digestion of Chicken Manure Assisted by Carbon Nanotubes: Promotion of Volatile Fatty Acids Consumption and Methane Production//Fermentation.- 2022. - Vol.8, Is.11. - Art. №641.
• Ziganshina E.E., Ziganshin A.M. Anaerobic Digestion of Chicken Manure in the Presence of Magnetite, Granular Activated Carbon, and Biochar: Operation of Anaerobic Reactors and Microbial Community Structure. Microorganisms.- 2022.- V.10.-1422.

• Ziganshina E.E., Belostotskiy D.E., Bulynina S.S., Ziganshin A.M. Effect of magnetite on anaerobic digestion of distillers grains and beet pulp: Operation of reactors and microbial community dynamics // Journal of Bioscience and Bioengineering. - 2021. - Vol.131. - P.290-298.
• Ziganshina E.E., Bulynina S.S., Ziganshin A.M. Assessment of Chlorella sorokiniana growth in anaerobic digester effluent // Plants. - 2021. - Vol.10. - P.1-17.

• Ziganshina E.E., Sagitov I.I., Akhmetova R.F.,... Ziganshin A.M. Comparison of the microbiota and inorganic anion content in the saliva of patients with gastroesophageal reflux disease and gastroesophageal reflux disease-free individuals // BioMed Research International. - 2020. - Vol. 2020 - Art. № 2681791.
• Mohammed W.S., Ziganshina E.E., Akhmetova R.F., Ziganshin A.M. Draft genome sequence of Bacillus sp. EE-W1 isolated from a biogas reactor // BMC Research Notes. - 2020. - Vol. 13. - Art. № 152.
• Ziganshina E.E, Belostotskiy D.E, Bulynina S.S, Ziganshin A.M. Influence of granular activated carbon on anaerobic co-digestion of sugar beet pulp and distillers grains with solubles // Processes. - 2020. - Vol.8. - P. 1-16.
• Ziganshina E.E., Mohammed W.S., Ziganshin A.M. Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester // BMC Research Notes. - 2020. - Vol.13. - Art. № 413.
• Ziganshina E.E., Bulynina S.S., Ziganshin A.M. Comparison of the photoautotrophic growth regimens of Chlorella sorokiniana in a photobioreactor for enhanced biomass productivity // Biology. - 2020. - Vol.9. - Art. №169.

• Ziganshin A.M., Wintsche B., Seifert J., Carstensen M., Born J., Kleinsteuber S. Spatial separation of metabolic stages in a tube anaerobic baffled reactor: reactor performance and microbial community dynamics //Applied Microbiology and Biotechnology. - 2019. - Vol. 103. - P. 3915–3929.

• Ziganshina E.E., Mohammed W.S., Doijad S.P., Shagimardanova E.I., Gogoleva N.E., Ziganshin A.M. Draft genome sequence of Brevibacterium epidermidis EZ-K02 isolated from nitrocellulose-contaminated wastewater environments // Data in Brief. - 2018. - Vol. 17. - P. 119-123.
• Ziganshina E.E., Mohammed W.S., Shagimardanova E.I., Vankov P.Y., Gogoleva N.E., Ziganshin A.M. Fungal, bacterial, and archaeal diversity in the digestive tract of several beetle larvae (Coleoptera) // Biomed Research International. - 2018. - Vol. 2018. - Art. № 6765438.
• Ziganshina E.E., Mohammed W.S., Shagimardanova E.I., Ziganshin A.M. Draft genome sequence data and analysis of Brachybacterium sp. strain EE-P12 isolated from a laboratory-scale anaerobic reactor // Data in Brief. - 2018. - Vol. 21. - P. 2576-2580.
• Ziganshina E.E., Mohammed W.S., Shagimardanova E.I., Shigapova L.H., Ziganshin A.M. Draft genome sequence of Bacillus pumilus strain EZ-C07 isolated from digested agricultural wastes // BMC Research Notes. - 2018. - Vol. 11. - Art. № 606.
• Ziganshina E.E., Mohammed W.S., Shagimardanova E.I., Shigapova L.H., Ziganshin A.M. Draft genome sequence of Staphylococcus sp. EZ-P03 isolated from a mesophilic anaerobic digester // BMC Research Notes. - 2018. - Vol.11 - Art. № 694.
• Mohammed W.S., Ziganshina E.E., Shagimardanova E.I., Gogoleva N.E., Ziganshin A.M. Comparison of intestinal bacterial and fungal communities across various xylophagous beetle larvae (Coleoptera: Cerambycidae) // Scientific Reports. - 2018. - Vol. 8. - Art. №10073.

• Mohammed W.S., Ziganshina E.E., Shagimardanova E.I., Gogoleva N.E., Ziganshin A.M. Draft genome sequence of Paenibacillus sp. EZ-K15 isolated from wastewater systems // BMC Research Notes. - 2017. - Vol. 10. - Art. № 734.
• Ziganshina E.E., Ibragimov E.M., Vankov P.Y., Miluykov V.A., Ziganshin A.M. Comparison of anaerobic digestion strategies of nitrogen-rich substrates: Performance of anaerobic reactors and microbial community diversity // Waste Management. - 2017. - Vol. 59. - P. 160-171.

• Ziganshina E.E., Ibragimov E.M., Ilinskaya O.N., Ziganshin A.M. Bacterial communities inhabiting toxic industrial wastewater generated during nitrocellulose production // Biologia (Poland). - 2016. - Vol. 71. - P. 70-78.
• Ziganshin A.M., Schmidt T., Lv Z., Liebetrau J., Richnow H.H, Kleinsteuber S., Nikolausz M. Reduction of the hydraulic retention time at constant high organic loading rate to reach the microbial limits of anaerobic digestion in various reactor systems // Bioresource Technology. - 2016. - Vol. 217. - P. 62-71.
• Ziganshin A.M., Ziganshina E.E., Kleinsteuber S., Nikolausz M. Comparative analysis of methanogenic communities in different laboratory-scale anaerobic digesters // Archaea. - 2016. - Vol. 2016. - Art. № 1272.
• Vankov P.Y., Ziganshina E.E., Ilinskaya O.N., Khafizova F.A., Khafizov R.G., Ziganshin A.M. Comparative analysis of bacterial communities associated with healthy and inflamed peri-implant tissues // BioNanoScience. - 2016. - Vol. 6. - P. 490-495.
• Ziganshina E.E., Sharifullina D.M., Lozhkin A.P., Khayrullin R.N., Ignatyev I.M., Ziganshin A.M. Bacterial communities associated with atherosclerotic plaques from individuals with atherosclerosis // PLoS ONE. - 2016. - Vol. 11. - Art. № e0164836.

• Ziganshin A.M., Ziganshina E.E., Byrne J., Gerlach R., Struve E., Biktagirov T., Rodionov A., Kappler A. Fe(III) mineral reduction followed by partial dissolution and reactive oxygen species generation during 2,4,6-trinitrotoluene transformation by the aerobic yeast Yarrowia lipolytica // AMB Express. - Vol. 5. - Art. # 8.
• Belostotskiy D.E., Ziganshina E.E., Siniagina M., Boulygina E.A., Miluykov V.A., Ziganshin A.M. Impact of the substrate loading regime and phosphoric acid supplementation on performance of biogas reactors and microbial community dynamics during anaerobic digestion of chicken wastes // Bioresource Technology. - 2015. - Vol. 193. - P. 42-52.
• Ziganshina E.E., Belostotskiy D.E., Ilinskaya O.N, Boulygina E.A., Grigoryeva T.V., Ziganshin A.M. Effect of the Organic Loading Rate Increase and the Presence of Zeolite on Microbial Community Composition and Process Stability During Anaerobic Digestion of Chicken Wastes // Microbial Ecology. - 2015. - Vol. 70. - P. 948-960.

• Ziganshin A.M., Gerlach R. Pathways of 2,4,6-trinitrotoluene transformation by aerobic yeasts // Environmental Science and Engineering (Subseries: Environmental Science). - 2014. - Vol. 112. - P. 301-311.
• Ziganshina E.E., Belostotskiy D.E., Shushlyaev R.V., Miluykov V.A., Vankov P.Y., Ziganshin A.M. Microbial community diversity in anaerobic reactors digesting turkey, chicken, and swine Wastes // Journal of Microbiology and Biotechnology. - 2014. - Vol. 24. - P. 1464-1472.
• Schmidt T., Ziganshin A.M., Nikolausz M., Scholwin F., Nelles M., Kleinsteuber S., Proter J. Effects of the reduction of the hydraulic retention time to 1.5 days at constant organic loading in CSTR, ASBR, and fixed-bed reactors - Performance and methanogenic community composition // Biomass and Bioenergy. - 2014. - Vol. 69. - P. 241-248.

• Khilyas I.V., Ziganshin A.M., Pannier A.J., Gerlach R. Effect of ferrihydrite on 2,4,6-trinitrotoluene biotransformation by an aerobic yeast // Biodegradation. - 2013. - Vol. 24. - P. 631-644.
• Ziganshin A.M., Liebetrau J., Proter J., Kleinsteuber S. Microbial community structure and dynamics during anaerobic digestion of various agricultural waste materials // Applied Microbiology and Biotechnology. - 2013. - Vol. 97. - P. 5161-5174.

• Ziganshin A.M., Ziganshina E.E., Kleinsteuber S., Proter J., Ilinskaya O.N. Methanogenic Community Dynamics during Anaerobic Utilization of Agricultural Wastes // Acta Naturae. - 2012. - Vol. 4. - P. 91-97.

• Ziganshin A.M., Schmidt T., Scholwin F., Il'inskaya O.N., Harms H., Kleinsteuber S. Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles // Applied Microbiology and Biotechnology. - 2011. - Vol. 89. - P. 2039-2052.

• Ziganshin A.M., Naumova R.P., Pannier A.J., Gerlach R. Influence of pH on 2,4,6-trinitrotoluene degradation by Yarrowia lipolytica // Chemosphere. - 2010. - Vol. 79. - P. 426-433.
• Ziganshin A.M., Gerlach R., Naumenko E.A., Naumova R.P. Aerobic degradation of 2,4,6-trinitrotoluene by the yeast strain Geotrichum candidum AN-Z4 // Microbiology. - 2010. - Vol. 79. - P. 178-183.

• Naumenko E.A., Naumov A.V., Suvorova E.S., Gerlach R., Ziganshin A.M., Lozhkin A.P., Silkin N.I., Naumova R.P. Participation of oxygen in the bacterial transformation of 2,4,6-trinitrotoluene. Biochemistry (Moscow). - Vol. 73. - P. 463-469

• Ziganshin A.M., Gerlach R., Borch T., Naumov A.V., Naumova R.P. Production of eight different hydride complexes and nitrite release from 2,4,6-trinitrotoluene by Yarrowia lipolytica // Applied and Environmental Microbiology. - 2007. - Vol. 73. - P. 7898-7905.
• Ziganshin A.M., Naumov A.V., Suvorova E.S., Naumenko E.A., Naumova R.P. Hydride-mediated reduction of 2,4,6-trinitrotoluene by yeasts as the way to its deep degradation // Microbiology. - Vol. 76. - P. 676-682