KFU. Card publication. Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W

KAZAN
FEDERAL UNIVERSITY

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COMPLETE GENOME SEQUENCE OF THE ABSCISIC ACID-UTILIZING STRAIN NOVOSPHINGOBIUM SP. P6W

Form of presentation

Articles in international journals and collections

Year of publication

2019

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Authors, employees of KFU

Gogolev Yuriy Viktorovich, author

Gogoleva Natalya Evgenevna, author

Gorshkov Vladimir Yurevich, author

Other authors

Belimov Andrey Alekseevich, author

Ismailov Timur Tolyatovich, author

Nikolaychik Evgeniy Arturovich, author

Safronova Vera Igorevna, author

Bibliographic description in the original language

Gogoleva N.E., Nikolaichik Y.A., Ismailov T.T., Gorshkov V.Y., Safronova V.I., Belimov A.A., Gogolev Y.V. Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W // 3 Biotech. – 2019. – 9(94)

Annotation

The phytohormone abscisic acid (ABA) plays multiple roles in plant survival and fitness. Significant quantities of ABA are constantly introduced into soil via root exudation, root turnover and incorporation of abscised shoot tissues. In addition, some phytopathogenic fungi synthesize ABA in the course of plant-microbe interactions. The accumulation of soil ABA can inhibit seed germination and root growth but despite this observation, the biochemical pathways of ABA conversion by microorganisms and genetic determinants of the process remain unknown. Here we report on the complete genome sequence of strain P6W, an ABA-utilizing isolate of the genus Novosphingobium. Strain P6W was isolated from the rhizosphere of rice (Oryza sativa L.) seedlings using a selective ABA-supplemented medium. The genome of strain P6W consists of 6,606,532 bp, which includes two chromosomes and two plasmids. It comprises of 5663 protein-coding genes and 80 RNA genes. ANI values calculated based on the analysis of nine previously sequenced genomes of members of the genus Novosphingobium ranged from 77 to 92 %, which suggests that strain P6W is potentially a new species of the genus Novosphingobium. Functional annotation of genes in the genome of strain P6W revealed a number genes that could be potentially responsible for ABA degradation.

Keywords

Abscisic acid, Novosphingobium, complete genome sequence, rhizosphere, plant-microbe interactions

The name of the journal

3 Biotech

On-line resource for training course

http://dspace.kpfu.ru/xmlui/bitstream/handle/net/150867/F_Biotech_19.pdf?sequence=1&isAllowed=y

URL

https://doi.org/10.1007/s13205-019-1625-8

Please use this ID to quote from or refer to the card

https://repository.kpfu.ru/eng/?p_id=202698&p_lang=2

Resource files

File name	Size (MB)	Format
F_Biotech_19.pdf	2,88	pdf	show / download

Full metadata record

Field DC	Value	Language
dc.contributor.author	Gogolev Yuriy Viktorovich	ru_RU
dc.contributor.author	Gogoleva Natalya Evgenevna	ru_RU
dc.contributor.author	Gorshkov Vladimir Yurevich	ru_RU
dc.contributor.author	Belimov Andrey Alekseevich	ru_RU
dc.contributor.author	Ismailov Timur Tolyatovich	ru_RU
dc.contributor.author	Nikolaychik Evgeniy Arturovich	ru_RU
dc.contributor.author	Safronova Vera Igorevna	ru_RU
dc.date.accessioned	2019-01-01T00:00:00Z	ru_RU
dc.date.available	2019-01-01T00:00:00Z	ru_RU
dc.date.issued	2019	ru_RU
dc.identifier.citation	Gogoleva N.E., Nikolaichik Y.A., Ismailov T.T., Gorshkov V.Y., Safronova V.I., Belimov A.A., Gogolev Y.V. Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W // 3 Biotech. – 2019. – 9(94)	ru_RU
dc.identifier.uri	https://repository.kpfu.ru/eng/?p_id=202698&p_lang=2	ru_RU
dc.description.abstract	3 Biotech	ru_RU
dc.description.abstract	The phytohormone abscisic acid (ABA) plays multiple roles in plant survival and fitness. Significant quantities of ABA are constantly introduced into soil via root exudation, root turnover and incorporation of abscised shoot tissues. In addition, some phytopathogenic fungi synthesize ABA in the course of plant-microbe interactions. The accumulation of soil ABA can inhibit seed germination and root growth but despite this observation, the biochemical pathways of ABA conversion by microorganisms and genetic determinants of the process remain unknown. Here we report on the complete genome sequence of strain P6W, an ABA-utilizing isolate of the genus Novosphingobium. Strain P6W was isolated from the rhizosphere of rice (Oryza sativa L.) seedlings using a selective ABA-supplemented medium. The genome of strain P6W consists of 6,606,532 bp, which includes two chromosomes and two plasmids. It comprises of 5663 protein-coding genes and 80 RNA genes. ANI values calculated based on the analysis of nine previously sequenced genomes of members of the genus Novosphingobium ranged from 77 to 92 %, which suggests that strain P6W is potentially a new species of the genus Novosphingobium. Functional annotation of genes in the genome of strain P6W revealed a number genes that could be potentially responsible for ABA degradation.	ru_RU
dc.language.iso	ru	ru_RU
dc.subject	Abscisic acid	ru_RU
dc.subject	Novosphingobium	ru_RU
dc.subject	complete genome sequence	ru_RU
dc.subject	rhizosphere	ru_RU
dc.subject	plant-microbe interactions	ru_RU
dc.title	Complete genome sequence of the abscisic acid-utilizing strain Novosphingobium sp. P6W	ru_RU
dc.type	Articles in international journals and collections	ru_RU