KFU. Card publication. The implementation of growth guidance factor diffusion via octree spatial structures for neuronal systems simulation

KAZAN
FEDERAL UNIVERSITY

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- 中文
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THE IMPLEMENTATION OF GROWTH GUIDANCE FACTOR DIFFUSION VIA OCTREE SPATIAL STRUCTURES FOR NEURONAL SYSTEMS SIMULATION

Form of presentation

Articles in international journals and collections

Year of publication

2018

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Authors, employees of KFU

Abramov Vitaliy Denisovich, author

Gafarov Fail Mubarakovich, author

Kugurakova Vlada Vladimirovna, author

Authors, students KFU

Sabitov Almaz Raushanovich, author

Bibliographic description in the original language

Sabitov A, Gafarov F, Kugurakova V, Abramov D, The implementation of growth guidance factor diffusion via octree spatial structures for neuronal systems simulation // Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). - 2018. - Vol.10745 LNCS, Is.. - P.158-163.

Annotation

The BioDynaMo project was created in CERN OpenLab V and aims to become a general platform for computer simulations for biological research. Important development stage was the code modernization by changing the architecture in a way to utilize multiple levels of parallelism offered by todays hardware. Individual neurons are implemented as spherical (for the soma) and cylindrical (for neurites) elements that have appropriate mechanical properties. The extracellular space is discretized, and allows for the diffusion of extracellular signaling molecules, as well as the physical interactions of the many developing neurons. This paper describes methods of the real-time growing brain dynamics simulation for BioDynaMo project, a specially the implementation of growth guidance factor diffusion via octree spatial structures. ? Springer International Publishing AG 2018.

Keywords

Biodynamo, Diffusion, Growth guidance factor, Neuronal systems, simulation, Octree, Octree spatial structures

The name of the journal

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

URL

https://www.scopus.com/inward/record.uri?eid=2-s2.0-85042066461&doi=10.1007%2f978-3-319-74521-3_18&partnerID=40&md5=6b6e96f456b0333f5f05fdbc5acedefe

Please use this ID to quote from or refer to the card

https://repository.kpfu.ru/eng/?p_id=176017&p_lang=2

Full metadata record

Field DC	Value	Language
dc.contributor.author	Abramov Vitaliy Denisovich	ru_RU
dc.contributor.author	Gafarov Fail Mubarakovich	ru_RU
dc.contributor.author	Kugurakova Vlada Vladimirovna	ru_RU
dc.contributor.author	Sabitov Almaz Raushanovich	ru_RU
dc.date.accessioned	2018-01-01T00:00:00Z	ru_RU
dc.date.available	2018-01-01T00:00:00Z	ru_RU
dc.date.issued	2018	ru_RU
dc.identifier.citation	Sabitov A, Gafarov F, Kugurakova V, Abramov D, The implementation of growth guidance factor diffusion via octree spatial structures for neuronal systems simulation // Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). - 2018. - Vol.10745 LNCS, Is.. - P.158-163.	ru_RU
dc.identifier.uri	https://repository.kpfu.ru/eng/?p_id=176017&p_lang=2	ru_RU
dc.description.abstract	Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)	ru_RU
dc.description.abstract	The BioDynaMo project was created in CERN OpenLab V and aims to become a general platform for computer simulations for biological research. Important development stage was the code modernization by changing the architecture in a way to utilize multiple levels of parallelism offered by todays hardware. Individual neurons are implemented as spherical (for the soma) and cylindrical (for neurites) elements that have appropriate mechanical properties. The extracellular space is discretized, and allows for the diffusion of extracellular signaling molecules, as well as the physical interactions of the many developing neurons. This paper describes methods of the real-time growing brain dynamics simulation for BioDynaMo project, a specially the implementation of growth guidance factor diffusion via octree spatial structures. ? Springer International Publishing AG 2018.	ru_RU
dc.language.iso	ru	ru_RU
dc.subject	Biodynamo	ru_RU
dc.subject	Diffusion	ru_RU
dc.subject	Growth guidance factor	ru_RU
dc.subject	Neuronal systems	ru_RU
dc.subject	simulation	ru_RU
dc.subject	Octree	ru_RU
dc.subject	Octree spatial structures	ru_RU
dc.title	The implementation of growth guidance factor diffusion via octree spatial structures for neuronal systems simulation	ru_RU
dc.type	Articles in international journals and collections	ru_RU