KFU. Card publication. Genetic Characterization of Small (s)-Segment Genome Puumala Virus Strain Kazan

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GENETIC CHARACTERIZATION OF SMALL (S)-SEGMENT GENOME PUUMALA VIRUS STRAIN KAZAN

Form of presentation

Articles in international journals and collections

Year of publication

2016

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Authors, employees of KFU

Davidyuk Yuriy Nikolaevich, author

Ismagilova Ruzilya Kamilevna, author

Kabve Emmanuel , author

Rizvanov Albert Anatolevich, author

Khaybullina Svetlana Francevna, author

Other authors

Morzunov Sergey Petrovich, author

Shakirova Venera Gusmanovna, author

Bibliographic description in the original language

Kabwe E. Genetic Characterization of Small (s)-Segment Genome Puumala Virus Strain Kazan / E. Kabwe, N. Y. Davidyuk, S. P. Morzunov, V. G. Shakirova, V. A Anokhin, G. S. Isaeva, R. K. Ismagilova, S. F. Khaiboullina, A. A. Rizvanov // BioNanoSci. (2016). doi:10.1007/s12668-016-0338-2

Annotation

We conducted phylogenetic analysis of the full length (1828 nt) small (S) segment genome sequence of Puumala virus RNA isolated from four bank voles (Myodes glareolus) captured during the 2014 outbreak. These virus sequences were compared to known sequences of Puumala viruses from nearby regions such as Samara and the Republic of Bashkortostan, as well as to European isolates. We found that there was over 89 % nucleotide identity between Puumala virus sequences isolated from the bank voles captured in Tatarstan. Sequence identity between Puumala viruses from the Tatarstan bank voles and the sequences from Republic of Bashkortostan and the Samara region were 90–95 %. Less similarity was found between Tatarstan sequences and Puumala strains circulating in Europe (79.7–87.7 %). These data suggest that Puumala viruses circulating within the bank vole population in the Republic of Tatarstan are phylogenetically closer to the viruses circulating in neighboring regions of Russia.

Keywords

Puumala virus, Hantaviruses, Bunyaviridae, Nephropathia Epidemica (NE), Hemorrhagic fever with renal syndrome (HFRS)

The name of the journal

BioNanoScience

Please use this ID to quote from or refer to the card

https://repository.kpfu.ru/eng/?p_id=154765&p_lang=2

Full metadata record

Field DC	Value	Language
dc.contributor.author	Davidyuk Yuriy Nikolaevich	ru_RU
dc.contributor.author	Ismagilova Ruzilya Kamilevna	ru_RU
dc.contributor.author	Kabve Emmanuel	ru_RU
dc.contributor.author	Rizvanov Albert Anatolevich	ru_RU
dc.contributor.author	Khaybullina Svetlana Francevna	ru_RU
dc.contributor.author	Morzunov Sergey Petrovich	ru_RU
dc.contributor.author	Shakirova Venera Gusmanovna	ru_RU
dc.date.accessioned	2016-01-01T00:00:00Z	ru_RU
dc.date.available	2016-01-01T00:00:00Z	ru_RU
dc.date.issued	2016	ru_RU
dc.identifier.citation	Kabwe E. Genetic Characterization of Small (s)-Segment Genome Puumala Virus Strain Kazan / E. Kabwe, N. Y. Davidyuk, S. P. Morzunov, V. G. Shakirova, V. A Anokhin, G. S. Isaeva, R. K. Ismagilova, S. F. Khaiboullina, A. A. Rizvanov // BioNanoSci. (2016). doi:10.1007/s12668-016-0338-2	ru_RU
dc.identifier.uri	https://repository.kpfu.ru/eng/?p_id=154765&p_lang=2	ru_RU
dc.description.abstract	BioNanoScience	ru_RU
dc.description.abstract	We conducted phylogenetic analysis of the full length (1828 nt) small (S) segment genome sequence of Puumala virus RNA isolated from four bank voles (Myodes glareolus) captured during the 2014 outbreak. These virus sequences were compared to known sequences of Puumala viruses from nearby regions such as Samara and the Republic of Bashkortostan, as well as to European isolates. We found that there was over 89 % nucleotide identity between Puumala virus sequences isolated from the bank voles captured in Tatarstan. Sequence identity between Puumala viruses from the Tatarstan bank voles and the sequences from Republic of Bashkortostan and the Samara region were 90–95 %. Less similarity was found between Tatarstan sequences and Puumala strains circulating in Europe (79.7–87.7 %). These data suggest that Puumala viruses circulating within the bank vole population in the Republic of Tatarstan are phylogenetically closer to the viruses circulating in neighboring regions of Russia.	ru_RU
dc.language.iso	ru	ru_RU
dc.subject	Puumala virus	ru_RU
dc.subject	Hantaviruses	ru_RU
dc.subject	Bunyaviridae	ru_RU
dc.subject	Nephropathia Epidemica (NE)	ru_RU
dc.subject	Hemorrhagic fever with renal syndrome (HFRS)	ru_RU
dc.title	Genetic Characterization of Small (s)-Segment Genome Puumala Virus Strain Kazan	ru_RU
dc.type	Articles in international journals and collections	ru_RU