KFU. Card publication. Analysis of genome grimelysin-containing locus in the genome of Serratia grimesii A2

KAZAN
FEDERAL UNIVERSITY

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ANALYSIS OF GENOME GRIMELYSIN-CONTAINING LOCUS IN THE GENOME OF SERRATIA GRIMESII A2

Form of presentation

Articles in international journals and collections

Year of publication

2016

Authors, employees of KFU

Gilyazeva Adeliya Gadelevna, author

Mardanova Ayslu Mirkasymovna, author

Toymenceva Anna Aleksandrovna, author

Authors, postgraduates KFU

Gilyazeva Adeliya Gadelevna, postgraduate kfu

Bibliographic description in the original language

Gilyazeva A.G. Analysis of genome grimelysin-containing locus in the genome of Serratia grimesii A2 / Gilyazeva A.G., Toymentseva A.A., Mardanova A.M. // BioNanoSci. - 2016. - doi: 10.1007/s12668-016-0330-x.

Annotation

Serratia grimesii strain A2 was isolated from buffered solution of actin by workers of Institute of Marine Biology, Vladivostok city [1]. This bacterium attracts special interest because of its ability to produce intracellular proteinase grimelysin which hydrolyzes actin in the single site and thus abolishes actin polymerization [1]. In addition to this well-characterized function, grimelysin is also required for invasion of bacteria into eukaryotic cells [1]. Here, we present the analysis of genome sequence of S. grimesii strain A2. The 5.133.068 bp draft genome consists of 120 contigs with 4999 coding sequences, including 82 RNA genes. Genome sequencing and annotation revealed the presence of grimelysin gene in the operon with the gene of hypothetical protein of unknown function and the presence of regulatory gene upstream of it. in silico analysis of promoter sequences allowed identification of putative binding sites for regulatory proteins. We anticipate that the S. grimesii strain

Keywords

Serratia grimesii, Genome sequencing, Grimelysin, Locus, Operon

The name of the journal

BioNanoScience

Please use this ID to quote from or refer to the card

https://repository.kpfu.ru/eng/?p_id=153237&p_lang=2

Full metadata record

Field DC	Value	Language
dc.contributor.author	Gilyazeva Adeliya Gadelevna	ru_RU
dc.contributor.author	Mardanova Ayslu Mirkasymovna	ru_RU
dc.contributor.author	Toymenceva Anna Aleksandrovna	ru_RU
dc.contributor.author	Gilyazeva Adeliya Gadelevna	ru_RU
dc.date.accessioned	2016-01-01T00:00:00Z	ru_RU
dc.date.available	2016-01-01T00:00:00Z	ru_RU
dc.date.issued	2016	ru_RU
dc.identifier.citation	Gilyazeva A.G. Analysis of genome grimelysin-containing locus in the genome of Serratia grimesii A2 / Gilyazeva A.G., Toymentseva A.A., Mardanova A.M. // BioNanoSci. - 2016. - doi: 10.1007/s12668-016-0330-x.	ru_RU
dc.identifier.uri	https://repository.kpfu.ru/eng/?p_id=153237&p_lang=2	ru_RU
dc.description.abstract	BioNanoScience	ru_RU
dc.description.abstract	Serratia grimesii strain A2 was isolated from buffered solution of actin by workers of Institute of Marine Biology, Vladivostok city [1]. This bacterium attracts special interest because of its ability to produce intracellular proteinase grimelysin which hydrolyzes actin in the single site and thus abolishes actin polymerization [1]. In addition to this well-characterized function, grimelysin is also required for invasion of bacteria into eukaryotic cells [1]. Here, we present the analysis of genome sequence of S. grimesii strain A2. The 5.133.068 bp draft genome consists of 120 contigs with 4999 coding sequences, including 82 RNA genes. Genome sequencing and annotation revealed the presence of grimelysin gene in the operon with the gene of hypothetical protein of unknown function and the presence of regulatory gene upstream of it. in silico analysis of promoter sequences allowed identification of putative binding sites for regulatory proteins. We anticipate that the S. grimesii strain	ru_RU
dc.language.iso	ru	ru_RU
dc.subject	Serratia grimesii	ru_RU
dc.subject	Genome sequencing	ru_RU
dc.subject	Grimelysin	ru_RU
dc.subject	Locus	ru_RU
dc.subject	Operon	ru_RU
dc.title	Analysis of genome grimelysin-containing locus in the genome of Serratia grimesii A2	ru_RU
dc.type	Articles in international journals and collections	ru_RU