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• Siniagina, M.N. Hydrogen sulfide-producing Escherichia coli strains in a patient with Crohn's colitis: a clinical case / M.N. Siniagina, A.V. Laikov, M.I. Markelova, E.A. Boulygina, N.A. Danilova, E.A. Sultanbekova, S.R. Abdulkhakov, T.V. Grigoryeva // FEBS Open Bio. - 2023. - V. 13 (Suppl. S2). - P. 159.
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• Romanova V, Markelova M, Boulygina E, Significance of both alkB and P450 alkane-degrading systems in Tsukamurella tyrosinosolvens: proteomic evidence // Applied Microbiology and Biotechnology. - 2022. - 106 (8). - pp. 3153-3171.
• Zolotykh M. et al. Single-nucleotide polymorphisms of POLQ rs3218634 and rs532411 may be associated with the risk of luminal breast cancer/ M. Zolotykh, A. Nesterova, A. Bilyalov, A. Zhdanova, A. Martyanova, A. Akhunzianov, R. Farzaleev, E. Boulygina, J. Filina, A. Rizvanov, R. Miftakhova //EUROPEAN JOURNAL OF CLINICAL INVESTIGATION. – 111 RIVER ST, HOBOKEN 07030-5774, NJ USA : WILEY, 2022. – Т. 52
• Kostenko V.V, Mouzykantov A.A, Baranova N.B, Development of Resistance to Clarithromycin and Amoxicillin-Clavulanic Acid in Lactiplantibacillus plantarum In Vitro Is Followed by Genomic Rearrangements and Evolution of Virulence//Microbiology Spectrum. - 2022. - Vol.10, Is.3. - .
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• Siniagina M.N, Laikov A.V, Markelova M.I, Competitive ability of Escherichia coli strains in the intestinal microbiota of patients with Crohn's disease and healthy volunteers: physiological, biochemical and genetic characteristics//Zhurnal Mikrobiologii Epidemiologii i Immunobiologii. - 2022. - Vol.99, Is.6. - P.669-681.
• Zolotykh Maria, Nesterova Alfya, Bilyalov Airat, Germline genetic variants of ERBB3 in triple-negative breast cancer//CELL DEATH DISCOVERY. - 2022. - Vol.8, Is.1. - P.10-10.
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• Lo Sasso G, Khachatryan L, Kondylis A, Inflammatory Bowel Disease-Associated Changes in the Gut: Focus on Kazan Patients//Inflammatory bowel diseases. - 2021. - Vol.27, Is.3. - P.418-433.
• Markelova M. TRANSCRIPTOMIC INSIGHT INTO IN VITRO INTERACTION OF ESCHERICHIA COLI WTH IMMUNOGLOBULIN A AS A MODEL OF THE INFLAMMATORY BOWEL DISEASE PATHOGENESIS / Markelova M., Siniagina M., Baichurina I., Laikov A., Boulygina E., Shah Mahmud R., Semin I., Kruglov A., Matuyshkina D., Musarova V., Grigoryeva T. // United European Gastroenterology Journal - October 2020. - Vol.8 (8) - P. 317.
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• Siniagina M.N, Markelova M.I, Boulygina E.A, Diversity and adaptations of escherichia coli strains: Exploring the intestinal community in crohn?s disease patients and healthy individuals//Microorganisms. - 2021. - Vol.9, Is.6. - Art. № 1299.
• Khusnutdinova D., Markelova M., Siniagina M., Overabundance of Lactobacillus species in gut microbiota of IBD patients//JOURNAL OF CROHNS & COLITIS. - 2021. - Vol.15, Is.. - P.S160-S161.
• Булыгина Е.А. Полногеномное секвенирование спортсменов: влияние нонсенс-мутаций на функциональные показатели / Булыгина Е.А., Борисов О.В., Валеева Е.В., Семенова Е.А., Ларин А.К., Набиуллина Р.М., Мавлиев Ф.А., Ахатов А.М., Генерозов Э.В., Ахметов И.И. // Медицинская генетика. - 2021. - № 20. - Вып. 4. - С. 19-29.
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• Сираева З.Ю., Булыгина Е.А., Исмагилова Р.К., Кравцова О.А. Метагеномный анализ структуры прокариотных сообществ горизонтов почв при No-Till технологии / З.Ю. Сираева, Е.А. Булыгина, Р.К. Исмагилова, О.А. Кравцова / Современные проблемы биохимии, генетики и биотехнологии: мат. III Всеросс. науч. конф. с междунар. участием, Уфа, 21-23 сент. 2021. - Уфа: РИЦ БашГУ, 2021. - С. 207-214.
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• Siniagina M., Markelova M., Boulygina E., Antibiotic resistome profiles of fecal Escherichia coli isolates in association with Crohn's disease//JOURNAL OF CROHNS & COLITIS. - 2021. - Vol.15, Is.. - P.S601-S602.
• Siniagina, Maria N., et al. Diversity and Adaptations of Escherichia coli Strains: Exploring the Intestinal Community in Crohn's Disease Patients and Healthy Individuals // Microorganisms. - 2021. - V.9. - N.6. - P.1299.

• Siniagina M, Markelova M, Laikov A, Cultivated Escherichia coli diversity in intestinal microbiota of Crohn's disease patients and healthy individuals: Whole genome data//Data in Brief. - 2020. - Vol.28, Is.. - Art. № 104948.
• Semenova E.A, Miyamoto-Mikami E, Akimov E.B, The association of HFE gene H63D polymorphism with endurance athlete status and aerobic capacity: novel findings and a meta-analysis//European Journal of Applied Physiology. - 2020. - Vol., Is.. - .
• Boulygina EA, Borisov OV, Valeeva EV, Semenova EA, Kostryukova ES, Kulemin NA, Larin AK, Nabiullina RM, Mavliev FA, Akhatov AM, Andryushchenko ON, Andryushchenko LB, Zmijewski P, Generozov EV, Ahmetov II. Whole-genome sequencing of elite athletes. Biol Sport. 2020;37(3):295-304.
• BILE ACIDS METABOLIZING BACTERIA ABUNDANCE IN THE GUT MICROBIOTA ON THE BACKGROUND OF H.PYLORI ERADICATION THERAPY // Safina D.D., Markelova M., Abdulkhakov S.R., Grigoryeva T., Boulygina E., Khusnutdinova D., Malanin S., Vasilyev I., Siniagina M., Abdulkhakov R. Abstracts of the UEGW 2020 // United European Gastroenterology Journal 2020. – Volume 8 (8). – P. 0652.
• Boulygina E.A, Borisov O.V, Valeeva E.V, Whole genome sequencing of elite athletes//Biology of Sport. - 2020. - Vol.37, Is.3. - P.295-304.
• DIARRHEA DURING H.PYLORI ERADICATION THERAPY AND HUMAN GUT MICROBIOTA COMPOSITION AND FUNCTIONAL POTENTIAL ALTERATIONS // Safina D.D., Markelova M., Abdulkhakov S.R., Grigoryeva T., Boulygina E., Khusnutdinova D., Malanin S., Vasilyev I., Siniagina M., Abdulkhakov R. Abstracts of the UEGW 2020 // United European Gastroenterology Journal 2020. – Volume 8 (8). – P. 0650.
• Khusnutdinova D. SHIFTS IN RESISTANCE OF LACTOBACILLUS IN HUMAN GUT MICROBIOTA AFTER HELICOBACTER PYLORI ERADICATION THERAPY / Khusnutdinova D., Markelova M., Siniagina M., Boulygina E., Malanin S., Grigoryeva T.V., Abdulkhakov S., Abdulkhakov R.A., Chernov V., Chernova O. // United European Gastroenterology Journal - October 2020. - Vol.8 (8) - P. 502.

• Martykanova D.S, Davletova N.C, Zemlenuhin I.A, Skin Microbiota in Contact Sports Athletes and Selection of Antiseptics for Professional Hygiene//BioMed Research International. - 2019. - Vol.2019, Is.. - Art. № 9843781.
• Romanova Valeriya A., Boulygina Eugenia A., Siniagina Maria N., Draft Genome Sequence of a Medium- and Long-Chain n-Alkane-Degrading Bacterium, Tsukamurella tyrosinosolvens Strain PS2, with Two Genetic Systems for Alkane Degradation//MICROBIOLOGY RESOURCE ANNOUNCEMENTS. - 2019. - Vol.8, Is.17. - Art. №e00218-19.
• Arleevskaya M., Larionova R., Kravtsova O., Shagimardanova E., Validov S., Valeeva A., Valieva D., Boulygina E., Takha E., Shuralev E., Mukminov M., Kazarian G., Renaudineau Y. Infections, microbiota and immune response at early stage of rheumatoid arthritis: results from the Tatarstan cohort // Proceeding of the VII International Meeting: New concepts on the mechanisms of inflammation, autoimmunity and tumorogenesis (6-8 June 2019, Kazan, Russia). – Kazan: MeDDok, 2019. – P. 76.
• Danilova N. A., Abdulkhakov S. R., Grigoryeva T. V., Markers of dysbiosis in patients with ulcerative colitis and Crohn's disease//TERAPEVTICHESKII ARKHIV. - 2019. - Vol.91, Is.4. - P.13-20.
• Semenova Ekaterina A., Boulygina Eugenia A., Valeeva Elena V., A Genome-wide Association Study For Muscle Fiber Composition//MEDICINE AND SCIENCE IN SPORTS AND EXERCISE. - 2019. - Vol.51, Is.6. - P.575-575.
• Siniagina M. No difference in the distribution of pathogenic factors found in Escherichia coli isolates from patients with Crohn's disease and healthy individuals / Siniagina M., Markelova M., Laikov A., Boulygina E., Khusnutdinova D., Kharchenko A., Fedorova M., Romanova V., Grigoryeva T. // United European Gastroenterology Journal - October 2019. - Vol.7 (8S) - P. 870.
• Khusnutdinova D. The development of resistance to clarithromycin and amoxicillin in Lactobacillus plantarum is accompanied by mutations not only in target genes / Khusnutdinova D., Markelova M., Boulygina E., Kupriyanova E., Siniagina M., Baranova N., Grigoryeva T., Chernov V., Chernova O. // United European Gastroenterology Journal - October 2019. - Vol.7 (8S) - P. 926.
• Pickering C, Suraci B, Semenova E.A, A Genome-Wide Association Study of Sprint Performance in Elite Youth Football Players//Journal of strength and conditioning research. - 2019. - Vol.33, Is.9. - P.2344-2351.
• Siniagina M. Cultivated Escherichia coli diversity in intestinal microbiota of Crohn's disease patients and healthy individuals: whole genome data / Siniagina M., Markelova M., Laikov A., Boulygina E., Khusnutdinova D., Kharchenko A., Misbakhova A., Grigoryeva T. //Data in Brief. – 2019. – V. 28. - P. 104948.
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• Semenova E.A., Boulygina E.A., Valeeva E.V., Kostryukova E.S., Kulemin N.A., Borisov O.V., Khabibova S.A., Larin A.K., Lyubaeva E.V., Popov D.V., Lysenko E.A., Vepkhvadze T.F., Lednev E.M., Generozov E.V., Ahmetov I.I. A genome?wide association study for muscle fiber composition // Medicine & Science in Sports & Exercise (Suppl.). ? 2019. ? V.49(5). ? P.456.
• Olekhnovich E.I, Manolov A.I, Samoilov A.E, Shifts in the human gut microbiota structure caused by quadruple helicobacter pylori eradication therapy//Frontiers in Microbiology. - 2019. - Vol.10, Is.AUG. - Art. № 1902.

• Baranova N.B, Malygina T.Y, Medvedeva E.S, Genome sequences of Acholeplasma laidlawii strains with increased resistance to tetracycline and melittin//Genome Announcements. - 2018. - Vol.6, Is.2. - Art. № e01446-17.
• Валеева Е.В., Семенова Е.А., Кашеваров Г.С., Ахметов И.И., Кравцова О.А. Ассоциация полиморфизма rs6265 BDNF и rs6313 HTR2A со стрессоустойчивостью хоккеистов // Сборник материалов Всероссийской научно-практической конференции с международным участием «Актуальные проблемы в области физической культуры и спорта«, посвященной 85-летию ФГБУ СПбНИИФК. – Санкт-Петербург. – 27-28 сентября 2018 г. – С.191-193.
• Семенова Е.А., Миямото-Миками Э., Акимов Е.Б., Аль-Хелаифи Ф., Мураками Х., Земпо Х., Кострюкова Е.С., Кулемин Н.А., Ларин А.К., Мияти М., Оспанова Е.А., Павленко А.В., Любаева Е.В., Попов Д.В., Виноградова О.Л., Булыгина Е.А., Кумагаи Х., Какиги Р., Кобаяши Х., Леонска-Дуниек А., Жастребски З., Ядзевска А., Моска В., Лулинска-Куклик Э., Савчук М., Чешчик П., Мазчик А., Франки П.В., Линдгрен К., Осколков Н., Ханссон О., Наито Х., Пикеринг К., Грималди К.А., Элейс М.А., Генерозов Э.В., Говорун В.М., Фуку Н., Ахметов И.И. Идентификация маркеров выносливости с помощью полногеномных технологий // Сборник материалов Всероссийской научно-практической конференции с международным участием «Актуальные проблемы в области физической культуры и спорта«, посвященной 85-летию ФГБУ СПбНИИФК. – Санкт-Петербург. – 27-28 сентября 2018 г. – С.234-236.
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• D. Khusnutdinova, S. Malanin, T. Grigoryeva, S. Abdulkhakov, I. Vasilyev, M. Markelova, E. Boulygina, M. Siniagina, R. Abdulkhakov, V. Chernov, O. Chernova. Fate of beneficial gut microbiote after H. Pylori eradication therapy: metagenomic landscape of resistance mechanisms. United European Gastroenterology Journal - October 2018: Vol.6 (8S): Suppl. 1 - P. A731, P 1828.
• Булыгина Е.А., Бочкарев В.В., Соловьев В.Д. Сопоставление генетических и лингвистических данных как подход к изучению миграций народов // Учен. зап. Казан. ун-та. Сер. Естеств. науки. – 2018. – Т. 160, кн. 2. – С. 227–239.
• Baranova N. B. et al. Genome Sequences of Acholeplasma laidlawii Strains with Increased Resistance to Tetracycline and Melittin / N. B. Baranova, T. Malygina, E. S. Medvedeva, E. A. Boulygina, M. N. Siniagina, M. A. Dramchini, R. A. Prottoy, A. A. Mouzykantov, M. N. Davydova, O. A. Chernova, V. M. Chernov //Genome announcements. – 2018. – V. 6. – N. 2. – P. e01446-17.
• Siniagina M.N. Crohn's disease-associated Escherichia coli serotyping through the whole-genome sequencing of cultivated intestinal community / M.N. Siniagina, M.I. Markelova, A.V. Laikov, E.A. Boulygina, T.V. Grigoryeva // 5th European Congress of Immunology ECI2018: abstract book. - P. 432
• Medvedeva E.S. Molecular bases of Acholeplasma laidlawii adaptation to environmental conditions / E.S. Medvedeva, N.B. Baranova, A.A. Mouzykantov, M.N. Siniagina, E.A. Boulygina, M.N. Davydova, O.A. Chernova, V.M. Chernov // The 14th Biennial Congress of the Anaerobe Society of the Americas. Anaerobe 2018. Abstract book. –July 9-12, 2018. – Las Vegas, Nevada, USA. – P. 159.
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• Ilya Vasilyev. First identification of C50 carotenoids biosynthesis gene cluster in nematode-associated bacterium Agreia Bicolorata strain VKM AC-1804 and its abundance in coryneform actinobacteria group / Ilya Vasilyev, Eugenia Boulygina, Dina Yarullina, Olga Ilinskaya // Abstracts of 16th Fat Soluble Vitamins Congress, p. 105.
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• Mouzykantov A.A, Medvedeva E.S, Malygina T.Y, Plasticity of Mycoplasmas: Changes in the Genomic Profile, as well as in the Cellular and Vesicular Proteomes of the Acholeplasma laidlawii in Adapting the Bacterium to Different Environmental Conditions//BioNanoScience. - 2017. - Vol.7, Is.2. - P.323-325.
• Martykanova D.S, Davletova N.C, Zemlenuhin I.A, Characterization of Dysbiotic Changes of Skin Microbiota in Contact Sports Athletes//BioNanoScience. - 2017. - Vol.7, Is.1. - pp 1-3.
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• Medvedeva E.S., Malygina T.Y., Baranova N.B., Mouzykantov А.А., Davydova M.N. , Siniagina M.N., Boulygina E.A., Chernova O.A., Chernov V.M. Molecular bases of antimicrobial resistance of Acholeplasma laidlawii. IC2AR 2017. Proceedings Book. 2nd International Caparica Conference in Antibiotic Resistance. Caparica, Portugal. – 2017. – P. 215.
• Семенова Е.А., Валеева Е.В., Булыгина Е.А., Губайдуллина С.И., Ахметов И.И. Применение омиксных технологий в системе спортивной подготовки // Учен. зап. Казан. ун-та. Сер. Естеств. науки. – 2017. – Т. 159, кн. 2. – С. 232–247
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• Romanova V. A., Boulygina E. A., Grigoryeva T. V., Comparison of virulence factors in clinical and environmental strains of actinobacterium Tsukamurella tyrosinosolvens based on whole-genome sequencing.//MOLECULAR BIOLOGY OF THE CELL. - 2017. - Vol.28, Is.. - .
• S. Malanin. Effects of Helicobacter pylori eradication therapy on gut resistome // S. Malanin, D. Safina, S. Abdulkhakov, D. Khusnutdinova, I. Vasilyev, T. Grigoryeva, M. Siniagina, M. Markelova, E. Boulygina, R. Abdulkhakov, V. Chernov // Helicobacter, Special Issue: XXXth International Workshop on Helicobacter & Microbiota in Inflammation & Cancer, 7-9 September 2017, Bordeaux.- Vol. 22, Is. S1. - P. 128
• Markelova M., Siniagina M., Boulygina E., Gastrointestinal microbiota of the Japanese quail: sex-based differences//FEBS JOURNAL. - 2017. - Vol.284, Is.. - P.380-380.
• Medvedeva E.S, Siniagina M.N, Malanin S.Y, Genome sequences of Acholeplasma laidlawii strains differing in sensitivity to ciprofloxacin//Genome Announcements. - 2017. - Vol.5, Is.44. - Art. № e01189-17.
• Boulygina E.A, Markelova M.I, Khusnutdinova D.R, Shotgun metagenomic data on the human stool samples to characterize shifts of the gut microbial profile after the Helicobacter pylori eradication therapy//Data in Brief. - 2017. - Vol.14, Is.. - P.458-461.
• Galitskaya P, Biktasheva L, Saveliev A, Fungal and bacterial successions in the process of co-composting of organic wastes as revealed by 454 pyrosequencing//PLoS ONE. - 2017. - Vol.12, Is.10. - Art. № e0186051.
• N. A. Danilova. Abundance of key intestinal dysbiosis markers in gut metagenomes of patients with ulcerative colitis and Crohn's disease / N. A. Danilova, M. Markelova, E. Boulygina, I. Vasilyev, S. Abdulkhakov, T. Grigoryeva, V. Dubinkina, A. Tyakht, A. Pavlenko, A. Odintsova, R. Abdulkhakov // Helicobacter, Special Issue: XXXth International Workshop on Helicobacter & Microbiota in Inflammation & Cancer, 7-9 September 2017, Bordeaux.- Vol. 22, Is. S1. - P. 124

• Медведева Е. С. Геномный и протеомный профили штаммов Acholeplasma laidlawii, различающихся по чувствительности к ципрофлоксацину / Е.С. Медведева, М.Н. Давыдова, А.А. Музыкантов, Н.Б. Баранова, Т.Ю. Григорьева, М.Н. Синягина, Е.А. Булыгина, О.А. Чернова, В.М. Чернов // Докл. АН. - 2016. - Т. 466, № 2. - С. 228-232.
• A. Laikov. Proteogenomic profile of the new alkane-oxidizing strain Tsukamurella tyrosinosolvens PS2 in relation to the emulsification activity / A. Laikov, V. Romanova, E. Boulygina, M. Siniagina, J. Romanova, T. Grigorieva // FEBS J. - 2016. - V. 283 (S1) – P. 373.
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• Medvedeva E.S, Davydova M.N, Mouzykantov A.A, Genomic and proteomic profiles of Acholeplasma laidlawii strains differing in sensitivity to ciprofloxacin//Doklady Biochemistry and Biophysics. - 2016. - Vol.466, Is.1. - P.23-27.
• A. Toymentseva. Genomic characterization of two Bacillus pumilus strains / A. Toymentseva, I. Danilova, D. Baranova, E. Boulygina, M. Markelova, M. Sharipova // FEBS J. - 2016. - V. 283 (S1) – P. 239.
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• Medvedeva E.S. Extracellular vesicles and resistance of mycoplasmas to fluoroquinolones: resistome of Acholeplasma laidlawii / E.S. Medvedeva, N.B. Baranova, T.Y. Grigoreva, A.A. Mouzykantov, E.A. Boulyguina, M.N. Siniagina, M.N. Davydova, O.A. Chernova, V.M. Chernov // The 6th Congress of European Microbiologists (FEMS 2015). Program book. – Maastricht, The Netherlands. – 2015. – P. 120.
• Григорьева Т.Ю. Молекулярные основы устойчивости микоплазм к фторхинолонам: резистом Acholeplasma laidlawii / Т.Ю. Григорьева, Е.С. Медведева, А.А. Музыкантов, Н.Б. Баранова, М.Н. Синягина, Е.А. Булыгина, М.Н. Давыдова, Г.Ф. Шаймарданова, О.А. Чернова, В.М. Чернов // Биология – наука ХХI века: 19-я Международная Пущинская школа-конференция молодых ученых. Сборник тезисов. – Пущино, Россия. – 2015 г. – С. 172-173.
• Suleimanova A.D, Toymentseva A.A, Boulygina E.A, High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1//Standards in Genomic Sciences. - 2015. - Vol., Is.. - .
• Vasilyev I, Siniagina M, Malanin S, Draft genome sequence of Agreia bicolorata strain AC-1804, a producer of large amounts of carotenoid pigments, isolated from narrow reed grass infected by the phytoparasitic nematode//Genome Announcements. - 2015. - Vol.3, Is.6. - Art. № e0138315.
• Belostotskiy D.E., Ziganshina E.E., Siniagina M., Boulygina E.A., Miluykov V.A., Ziganshin A.M. Impact of the substrate loading regime and phosphoric acid supplementation on performance of biogas reactors and microbial community dynamics during anaerobic digestion of chicken wastes // Bioresource Technology. - 2015. - Vol. 193. - P. 42-52.
• Toymentseva A.A, Suleimanova A.D, Boulygina E.A, Draft genome sequence of Bacillus ginsengihumi strain M2.11 with phytase activity//Genome Announcements. - 2015. - Vol.3, Is.4. - Art. № e00851-15.
• Ziganshina E.E., Belostotskiy D.E., Ilinskaya O.N, Boulygina E.A., Grigoryeva T.V., Ziganshin A.M. Effect of the Organic Loading Rate Increase and the Presence of Zeolite on Microbial Community Composition and Process Stability During Anaerobic Digestion of Chicken Wastes // Microbial Ecology. - 2015. - Vol. 70. - P. 948-960.

• Булыгина Е.А., Соловьев В.Д. ДНК-филогения и лингвистическое разнообразие тюркских народов // Учен. зап. Казан. ун-та. Сер. Естеств. науки. - 2014. - Т. 155, 4. - С. 69-81
• Е. А. Булыгина. Транскриптомный анализ ответа мультипотентных мезенхимальных стромальных клеток человека на воздействие неионных блоксополимеров / Е.А. Булыгина, Н.Л. Блатт, А.К. Шафигуллина, А.А. Ризванов // Клеточная трансплантология и тканевая инженерия. – 2013. – Т. 8, №3. – С. 11-12.
• Akhatova F.S, Boulygina E.A, Litvinov S.S, Analysis of polymorphism in Alu-incertional loci in the population of Tatar in Russia//World Applied Sciences Journal. - 2013. - Vol.26, Is.4. - P.461-463.
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• Bulygina E., Solovyev V., Bayrasheva V. North-Caucasian languages: measures of similarities//Proceedings of The XVIII-th Intern. Conf. “Cognitive Modeling in Linguistics”. Kazan: KFU, 2013
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